Helianthus annuus (common sunflower): 110875788
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Entry
110875788 CDS
T05101
Name
(RefSeq) histone deacetylase 9 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03082
ATP-dependent chromatin remodeling
han03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110875788
03083 Polycomb repressive complex
110875788
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
han03036
]
110875788
Enzymes [BR:
han01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
110875788
Chromosome and associated proteins [BR:
han03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
110875788
HDAC complexes
Sin3A-HDAC complex
110875788
BRAF-HDAC complex
110875788
REST complex
110875788
SHIP complex
110875788
MiDAC complex
110875788
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
110875788
Heterochromatin formation proteins
Other heterochromatin formation proteins
110875788
Chromatin remodeling factors
NuRD complex
110875788
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
110875788
NCBI-ProteinID:
XP_021979681
LinkDB
All DBs
Position
1:complement(116600785..116605244)
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDRISYFYDGDAGNVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLQRINPDTQHLFPEEMAKFKLGEDCPVFDDMFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGNLFFPGSGDVKEIGEQEGKFYAINIPLKDGIDDTSFTRLFKT
IISKVVETYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFGLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPDNEYIKYFAPECSLRIPTAHIENFNSKSYLGTIK
MQVLENLRCIQHAPSVQMQEVPPDFYIPDFDEDEKNPDERIDQHTQDKHIQRDDEYYEGD
NDNDHHMDDV
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcggtcaaaagacagaatttcatacttctacgacggggatgctggtaatgtttacttt
ggaccgaatcatccaatgaagccgcatcggttatgtatgactcatcatttggtgctttcc
tatgatcttcacaagaagatggaaatttataggccgcataaggcgtatccggttgagcta
gcgcaatttcactcggctgattatgtggagttcttgcagcggataaatccggacacacaa
catttgtttccagaagaaatggcaaagtttaagcttggagaagattgccccgtctttgat
gatatgttcgaattttgccaaatatacgctggaggaacaatcgatgctgcacgcagatta
aacaatcagctttgtgacattgcgataaattgggccggggggctacaccatgctaaaaag
tgcgaggcatccggattttgttatatcaacgatttggttttgggaattttggagcttctt
aagtatcatgcacgagttctgtatattgatatagacgttcatcatggtgatggtgtagaa
gaagccttttacttcactgacagggtgatgacagttagttttcacaagtatggaaatctg
ttctttcctggatcaggcgatgttaaggaaattggggaacaagaaggtaaattctacgca
attaatatcccgttaaaggatggcatagatgacaccagctttactcgtttgtttaaaacc
ataatttcgaaagttgttgaaacttatcaaccgggtgtgatagttctccagtgtggagcc
gattcacttgctggggaccgcttgggctgcttcaatctctctatagatggacacgctgaa
tgtgttaggttcgttaaaaaatttggcttgccccttttggtaactggaggtggaggatat
acgaaagaaaatgttgctcggtgttggactgttgaaacgggagttcttttagacaccgag
cttcctaatgagatcccagataatgaatatatcaagtattttgctcctgagtgttcatta
aggattccaactgctcatattgaaaatttcaatagcaagtcctatctaggcactataaag
atgcaagttctagaaaatcttcgttgcattcaacatgctccaagtgtacagatgcaagag
gttccacctgatttctatattcctgattttgatgaagacgagaagaaccctgatgaacgt
atagatcaacacacacaagacaaacatattcaacgtgacgatgagtactatgaaggagac
aacgacaacgatcatcacatggatgatgtttag
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