Helianthus annuus (common sunflower): 110877877
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Entry
110877877 CDS
T05101
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03013
Nucleocytoplasmic transport
han03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110877877
03015 mRNA surveillance pathway
110877877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
han03019
]
110877877
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110877877
mRNA cycle factors
P-body specific factors
110877877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
110877877
NCBI-ProteinID:
XP_021981790
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All DBs
Position
9:complement(63458074..63466564)
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AA seq
487 aa
AA seq
DB search
MKGPLDRTKVVLRHLPHTISESVIMEQIDARFAGRYNWFCFRSGKNSTKRQLYSRAYIDF
KRPDDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPKQWSKKDGREGTIGKDPEYLE
FLEFISKPVENLPSAEIQLEKKEAERAGAAKEAPIVTPLMDFVRQKRAAKGVSRRSLLNG
KLMRRAGASSSNSSSVVVKHGSEKRTTSTMYVLKDSGKSRNSKEKSTYVKKDDRQVSDKS
GSVVLEEEKSASGAPDTGKKKILLLKGKEKEILQVVTDLTPQQNSPPAKPAYASGAARQN
QRHEASGRIIRSILVNKDARQNQSEPNQSLNQEKDRRPPRAPLNDDKVHGHDLHKDKLSR
NNRDKPDRGVWTPLRRSDGSDESLSSSASRSTQVGSDSAEGTCGEAKYDVSNERGVELKP
VGTGRGAHFFSDNGTHKHSGRRASTNNAKDADGSSNVNDGKPSKRGVSAGYGSHEKRVWV
QKPSSGS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtccgttagatcggacaaaagtcgtgctgcggcacttgccgcacacgatttcg
gagtcggtgatcatggagcagattgatgctcggtttgccggtcgatataactggttctgt
ttccgttctggaaagaatagcacaaagcgtcaattatattccagagcctatattgacttt
aagcggccggatgatgtcattgagtttgcagagttcttcgatgggcatgttttcgttaac
gagaagggtacccaatttaaaacaattgttgaatatgcaccttcacagcgtgttcccaag
caatggtctaaaaaagacggacgtgaagggacaatagggaaagatcccgagtatcttgaa
ttccttgagtttatttcaaagcctgtggagaatcttcccagtgcagagatacaattggaa
aaaaaggaagctgagcgagctggtgctgctaaagaagctcctatagtcacaccgttaatg
gattttgttaggcagaaacgagctgccaagggtgtatcccggcggtcattgcttaacggg
aagttaatgagaagggctggtgcatcatcgtcaaattcaagttctgttgtagtgaaacat
ggttctgaaaagaggacgacttctaccatgtatgtcctaaaggatagtggaaagagcaga
aacagtaaagagaagtcaacttatgtcaaaaaagacgatcgtcaagtttctgataaatct
ggaagtgtagtactggaggaagaaaaaagtgcatctggagcccctgatactggaaagaag
aaaattctacttttaaagggaaaagaaaaggaaattctccaggtggtcacagacttgacg
cctcagcagaactcaccaccagctaaacctgcgtatgcatctggtgctgctagacagaat
caacgacatgaggctagtggaaggattattcgaagtatactcgttaacaaggatgcaagg
caaaatcagtctgaaccgaatcagagtttaaatcaggaaaaggaccgaagaccacctagg
gcaccgctaaacgatgataaggtccatgggcatgatttgcataaggataagctatctagg
aataacagagacaaaccggatcgtggtgtttggactcccctgcgccgttctgacggtagt
gatgagtcgttgtcctcttctgcttctcggtccacgcaagtgggatcagattccgcagaa
ggaacttgtggtgaagccaagtatgatgtgtcaaatgaacgtggtgtggaacttaaaccc
gttggaactggacgcggtgctcatttcttttctgataatggtacccataaacacagtggt
cgccgtgcatccactaataatgctaaggatgcagatggctcttcgaatgtgaacgacgga
aaaccttcaaaaagaggtgtttctgctggctatggttcccacgagaagcgcgtatgggtc
caaaagccaagttctggttcttag
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