Helianthus annuus (common sunflower): 110915203
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Entry
110915203 CDS
T05101
Name
(RefSeq) probable RNA-dependent RNA polymerase 5
KO
K11699
RNA-dependent RNA polymerase [EC:
2.7.7.48
]
Organism
han
Helianthus annuus (common sunflower)
Brite
KEGG Orthology (KO) [BR:
han00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
han03036
]
110915203
Enzymes [BR:
han01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.48 RNA-directed RNA polymerase
110915203
Chromosome and associated proteins [BR:
han03036
]
Eukaryotic type
Gene silencing
RNA interference (RNAi) pathway
RDRC (RNA-directed RNA polymerase complex)
110915203
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RdRP
DUF2383
Motif
Other DBs
NCBI-GeneID:
110915203
NCBI-ProteinID:
XP_022015556
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All DBs
Position
16:56928448..56936709
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AA seq
1089 aa
AA seq
DB search
MNGEQEVPLPFTVDRMINEICLQKLLPPPDAAARRFLSKITEESAIDVLRRVSSTSKPIY
NISSYIVWMVNKYGTLPSASNGEAESVRLSPHYPSSPSSTACSSPQKSALHDSPTLKEFF
ESPCCCKSASPVKCQYYSATNNGHETRVQRQNSGLSCSSLKDAMPAYAPSVSHSVSSTSS
LKGTNGNHLDRNFYGSPRTSYCGSPDQTKLSAPFDPPASNYKISDQSLILAELEFRKLFM
VYSYIGRNKLEDVVSVDDANEINSMKSLQMFDFEDRMWSKFGSRYCQPSDRASNLDWDSG
KTHSYTCYVSSDGGYQFKPYLITKRTHLQRVIGDENVLTVKFAEAADMTTCRNYETFAES
GIHVGLRHYRFFVFKDDGKERKTYEKEDRKRGSSVTCYFVKRESIAPWDDRDNLIMNYKT
THDVRCLFMHIHTVPNIAKYNARLSLILSTTMKLQVDLASVSVEQIDDIPCIDENGCTVC
DEDGEPSIHTDGTGFISEDLAVLVPNDFLDAKFTKAKDYEFDFIQTETGSAGLGGRQVLV
REPPLLIQCRLFHEGSAVKGTLLVNKKLKPRTIQVRPSMIKVKKDPRLSDKKSFNSLEIV
SVSHKPKEAKLSKYLIALLSIGGVPKEYFLELLANTLNDIQRVCFDRRAAFRIANIYQNI
DDSGICMEMFGARIPLTEPFFQYRLSQLAKQERKRLGEGKIPLTESFYLMGTTDPTGTLN
SDEVCVILENGQISGKVLVYRSPGLHFGDIHVLNARYVKELEDYIGNGKFAIFFSTKGRR
SVANEIATGDFDGDLYFVSRNPQLLYYFKPCEPWTRIYSTPNAPSKKPSDLSFEELEKEL
IRLVFSPKTHSSVVGITAESWMAFMDQYLTLQDDDGDDDEKRDIKKKMLHLIDLHYDAID
AAKSGKKVVVPNNLKATRYPHYMGRKPEYHSTSILGKIFDQFQNRKNEKLPVQEIWKLPE
FNVSIPHSCLNTWNERYRTYKQEMSNALKDIDQSKNDAASSVITKYKQMLYGASDFKDST
RNIEDVYNEALAIYHVTYDYAKSIKDVAKCGFAWKVAGSALCAYHRKSHCMKTGEREITI
LSSAFDGIF
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgaacggtgaacaagaagttccgctgccgtttacggtggaccggatgatcaacgagata
tgcctccagaagcttcttccaccgcctgacgccgctgctcggagatttctttcgaagatc
accgaagagtctgccattgacgtgttgagaagagttagttcaacgtccaaaccgatttat
aacatcagtagttacattgtttggatggtcaataagtacggaacgctgccttctgcttcc
aacggtgaagcagagagtgttcgtttatcgccgcattatccgtcttcgccttcatctaca
gcttgttccagtcctcagaaaagtgcattacatgattctccaactttgaaggagtttttt
gaatcaccttgctgttgtaagagtgctagtcctgtgaaatgtcagtattatagtgctaca
aacaacggccatgaaactcgtgttcaacgacagaattcaggcttgtcttgttctagtttg
aaagatgcaatgcctgcttacgcaccaagtgttagccacagtgtttcatctacctctagt
ttaaagggcacaaatggtaatcacctggaccgaaacttctatggctctccaaggactagc
tactgtggttcacccgatcaaacgaaactatctgcaccatttgatcctccagcatcaaac
tataaaataagcgatcagtcactgattcttgctgagctggagttcaggaaattattcatg
gtatatagttacatcggaagaaacaagctggaggatgttgtctctgttgatgatgcaaac
gaaataaactcgatgaagtcgttgcaaatgtttgattttgaggatcggatgtggagcaaa
tttggtagccgttactgccaaccgtctgatagagcctcgaatcttgactgggattccggg
aagacacactcgtatacatgttacgtgagttctgatggaggttaccaatttaagccgtat
cttataacaaaaagaactcatctacaaagggtgataggagatgaaaacgtattgaccgtc
aagtttgcagaggctgcagacatgacgacttgcagaaattacgaaacatttgcagaatca
gggattcatgttgggttaagacattatcgcttttttgtattcaaagatgatggcaaagaa
aggaaaacttacgaaaaagaagacaggaaacgagggtcatctgtgacatgttattttgtt
aaaagggaatcgattgcaccgtgggatgatagagacaatttgataatgaattacaaaact
acccatgacgtacggtgtctcttcatgcatatacatacggtccctaacatcgccaagtac
aatgcgaggctttctcttattctatcaacaacgatgaagctccaagttgatcttgcttca
gtgtcggtagaacaaattgatgacatcccttgcattgatgaaaacggctgtactgtgtgt
gatgaagatggagaaccatcgatacatacagacggaaccggatttatatctgaagatcta
gctgtcttggtcccaaacgactttcttgatgcaaagtttacgaaagctaaagattacgag
tttgactttatccaaactgaaactggatcagctggcttaggaggaagacaggtgttggtt
agagaaccgcctttgctgatccagtgtcgtttgtttcacgagggttctgccgttaaagga
actcttcttgttaacaagaagcttaaaccaagaacaatacaagtcagaccatcaatgatt
aaggttaagaaagatccaagattgtcagataaaaaatcatttaattctctcgaaatagtc
tctgtaagtcataaaccgaaagaagctaaactatcaaagtatttgatagcacttttaagc
attggaggcgtccctaaagaatattttttggaattactagcaaacaccttaaacgatatt
caaagagtatgctttgatcgacgtgcagcatttcgaatcgcaaacatttatcaaaatata
gatgattctggaatttgcatggaaatgttcggggcccgcattcctcttaccgaaccattc
tttcagtaccgcttatctcagctcgccaaacaagaaagaaaaaggcttggtgaaggaaaa
atcccacttaccgagagcttttatttaatgggaacaactgatcctactggaaccttgaat
agtgatgaagtttgcgttatccttgagaatggtcagatatcaggcaaggttctagtgtac
aggagtccgggccttcattttggagatatacacgttttaaacgctcggtatgtgaaagaa
ttagaagattatattggaaacggtaaatttgctatattcttttccacaaaaggaagaaga
tcagtcgcaaatgaaattgcaactggcgattttgacggggatctgtatttcgtctcaaga
aatcctcagctgttatattacttcaaaccgtgtgagccatggacacgtatttactcaacg
ccaaatgcacctagtaagaaaccgagtgacttatcttttgaagagttggagaaggagttg
attagactagttttttcaccgaaaacacacagtagtgtagttggaattacagctgaaagt
tggatggcatttatggatcagtatctgacattgcaagatgatgacggtgatgatgatgag
aagcgtgatatcaagaaaaagatgttgcatttgatcgacttacactatgatgctattgat
gcggctaaaagtggcaaaaaggttgtagttcctaataatttaaaagccacacgttatcct
cattatatgggtcgaaaaccagaatatcattccacttctattcttggaaagatttttgat
caatttcagaatcgtaaaaacgagaagttaccagtacaagaaatctggaaattgccagaa
ttcaacgtcagtattcctcattcttgcttaaacacgtggaatgaaagataccgaacctat
aaacaggagatgtcgaatgcactgaaagacatcgaccaatcgaaaaacgatgctgcaagc
agtgtgatcacaaagtataagcagatgttatacggtgcctcggattttaaagatagcacg
cgtaacattgaggatgtgtacaatgaagcgctcgcgatttaccatgttacttatgattat
gcgaaaagcataaaagatgttgcaaaatgtgggtttgcctggaaagttgctggttcagct
ctttgcgcgtatcacaggaagagtcactgtatgaagacgggagaaagagaaattacaatt
ctctcctcagcatttgatggtatattttaa
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