Helianthus annuus (common sunflower): 110924744
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Entry
110924744 CDS
T05101
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110924744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
han03021
]
110924744
03019 Messenger RNA biogenesis [BR:
han03019
]
110924744
Transcription machinery [BR:
han03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110924744
Messenger RNA biogenesis [BR:
han03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110924744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf-C2H2
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
110924744
NCBI-ProteinID:
XP_022024430
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All DBs
Position
2:152594678..152598986
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AA seq
817 aa
AA seq
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MMNSNSNSNSNNSRGRSFDHRSARNGNPSLMKKPRLVTEEPAVNVIRSGGYNLSGENRSV
VVQRQAVGFRPPVVGDGDGYQPQSLSQIKQQQHQELVSQYRTALAELTFNSKPIITNLTI
IAGENLQAAKAVAATICNNIVEVPSDQKLPSLYLLDSIVKNIGRDYIKHFSTKLPEVFCK
AYRQVDSTVHSGMRHLFGTWKGVFPPQTLQSIEKELGFQSAGNGSTSGLTTSRPDSQPQR
PPARSIHVNPKYLEARQKLQHPTRAKDTAGDITRNLISNSPEDTGRQDRMAVNTNLQRSR
ADPRLKFNAQREAESDLTHENSGASYNNFDFGSDLSSERVAEHGTETISRLARNSFDVKH
GLHNYSASRSAIPDVKLQSMNKGTGEISRNWKNSDEEEYMWDDVSSVATKPTSSNSSKRD
PRLYFDPERPVTKTATPSGQQPPRQRPRVPYDLADQDIIESDDKAPRFRGQKNTGIPISS
QSHQNSFQIKPPISQASNSQKSKIQNLRPPSPQLPIKHDPFLPPYQPEPVSDPVSTTSTS
LGPLAHPTNASSLLAAVSSIFGNKPISSTVSSTVGNTASTASNNVSSLLSTLVAKGLISA
SDDNSKNQSPSDDKIKIPPIVSSSLISTSSTSSDLSPSDPVSKTTTNEEIKCPIGFEFRA
DVIREFHPGVINDLIDDLPHQCSICGLRFKLQERFDKHMEWHTLRNSDADSSRKWFFNRE
DWVNGSSNEGALEVDGETMVNADESQVVCVLCGEVFDDFYSLERSKWMFKGAAYLDITNG
KVGNAKNGVIVHVNCVSDHSLTDLGLVDDVKMEKGVC
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgatgaatagtaacagtaatagtaatagtaataattctcgaggtagatcgttcgatcat
cgatcggctcgaaacggaaaccctagcttgatgaagaaaccgagattagtaaccgaagag
cctgcggttaatgttattcgcagtggcggatataatctgagtggagagaataggtctgtg
gttgttcagaggcaggcggtagggtttcggcctccggtggtaggggatggagatggttat
cagccgcagtcgttgtcgcaaattaagcagcagcagcatcaggagcttgtgagtcagtat
aggactgctttggctgagcttacgttcaattcgaaaccgattattacgaatttgacgatt
attgctggagagaatttgcaggctgctaaagctgttgctgccactatctgcaataatatt
gttgaggttccgagtgatcaaaagttaccttcactgtatcttctcgacagtatcgtgaaa
aacattgggcgggattacattaaacacttttccaccaaactccccgaggttttctgcaag
gcgtacagacaggttgattctacagtacattccggtatgcggcatcttttcgggacttgg
aaaggagtatttcctcctcaaacgcttcaatcgatagagaaagaactcggttttcaatca
gccgggaatgggtcaacctcagggctgaccacatctagacccgactcacagcctcaacgt
cctcctgcgcgtagtattcatgtaaatccgaagtatttggaagctagacagaaactccaa
catccaacaagggcaaaagatacagcaggtgacataactcgaaacttgattagtaattca
cctgaagatactggcagacaagaccgtatggctgttaataccaatcttcagagatcgcgt
gctgatccacggcttaaattcaatgcacaacgagaggcggagagcgatctaactcatgag
aacagcggtgcatcgtataataatttcgattttggttccgatttatcaagcgaaagagtt
gcagagcatggtacggagacaatatccaggctggcaagaaattctttcgacgtaaagcat
ggattgcacaattattcggcctcgagatccgcaattcccgatgtgaaactacagtctatg
aataaaggaaccggtgaaatcagtagaaactggaagaactcagacgaagaggagtacatg
tgggacgatgtgagttcggttgcaacgaagcccacttcgtctaatagctcaaagagagac
ccgcggttgtattttgacccggaaagaccggtaacgaaaaccgcaacaccatctggtcaa
caaccgccacgtcagcgtcctagggtaccgtatgatttagctgatcaagatataatagaa
tcagatgataaagcacctcgatttcgaggtcaaaagaacacagggattcctatttctagt
caatctcatcagaattctttccaaataaaacctccgatttcacaagcgagtaactctcaa
aaatcgaagattcaaaatttacgcccgccttcacctcaattaccgataaagcatgatccg
ttcctgccgccttatcaacccgaacctgtatcggatcctgtttcgacaactagtacctca
ttgggcccactggcccacccgacaaatgccagtagcttgttagctgctgttagcagcata
tttggtaacaaaccaatttcgtcaacagtgagttcaactgtcggtaatactgcgtcaact
gcgtcaaataacgtgtcaagtcttttaagtacgttagtcgccaaaggcttaatttccgca
tcagatgataattctaagaaccagagcccgagtgatgataagattaagattcccccaatt
gtatcatcttcgttgatatctacgtcgtctactagcagtgatctatctccatccgatcct
gtatctaaaactaccaccaatgaagaaatcaagtgtcctatcggtttcgaatttagggct
gatgtcatcagggagtttcatcctggtgtgattaatgaccttatcgacgatcttccgcat
caatgcagcatatgtggtctaagatttaaacttcaagaacggtttgataaacatatggaa
tggcatacattgagaaattccgatgctgactcatcaagaaagtggttctttaaccgtgag
gattgggttaatgggtcgagtaatgagggcgcgttggaggttgatggtgagacaatggtt
aatgcagacgaaagccaagttgtatgcgtgttgtgtggcgaagtgtttgatgatttttac
agtttagaaaggagtaaatggatgtttaaaggagctgcgtatctcgacattaccaatggt
aaagttggaaatgcgaagaatggtgttattgtgcatgtaaattgtgtgtcggatcattcg
ttgactgatctgggcctggtcgatgatgtcaaaatggaaaaaggtgtatgctga
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