Helianthus annuus (common sunflower): 110926314
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Entry
110926314 CDS
T05101
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03022
Basal transcription factors
han03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
110926314
09124 Replication and repair
03420 Nucleotide excision repair
110926314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
han03021
]
110926314
03400 DNA repair and recombination proteins [BR:
han03400
]
110926314
Transcription machinery [BR:
han03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
110926314
DNA repair and recombination proteins [BR:
han03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
110926314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
AcylCoA_dehyd_C
Motif
Other DBs
NCBI-GeneID:
110926314
NCBI-ProteinID:
XP_022025753
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All DBs
Position
17:complement(131798643..131810317)
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AA seq
452 aa
AA seq
DB search
MPQVRIIAKNFMDMVASLPAMKLDKLYDNPFICEAILRSLPPLAKKYVLQMLYIDVAVTD
TLLQEWVLADGASKHKVAVDRLIQLRVFTEVVDRKKETTYLLNQKFRMNLREHIIRGGVP
PREPMAANITVRLPSLEDLDNYAAQQWECFLLHLINSAEAEVTTKSISPSMMKVFQRGLL
SQRDKEGPRLTESGFQFLLMDTNAQLWYIIREYISNSEDRGVDSADLISFLLELSFHVTG
EAYNVNTLDDIQRTTVKDLADLGLIKLQQGRKDSWFIPTKLATNLSISLSDASSRKQGYV
VVETNFRLYAYSTSKLHCEILRLFARVEYQLPNLIVGSITKENLYKAFQNGITADQIISF
LQQNAHPRVAERVPSVPENVTDQIRLWESDLNRVEMTPAHFFDDFPSRDMFEAACDFARE
FSSLLWEDSKKMRLIVKSEIYGHMKDHLSRQK
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaagtgaggatcatagcgaagaatttcatggatatggtggcttcattacccgcc
atgaagcttgacaagttatatgataatcccttcatctgtgaagccattctaagatctttg
ccaccattggcgaagaagtatgttctccagatgctgtatatagatgttgctgtgacagac
actttgttgcaagagtgggttcttgctgatggtgcttcaaagcataaagttgctgttgat
agattaattcagttgagagtctttactgaagttgttgacaggaaaaaggagaccacttac
ttgttaaaccagaagttccggatgaacctccgggagcatattattcgcggtggtgtaccg
ccacgagaacctatggctgcaaatataaccgtacggctcccaagcttggaggatctagac
aactatgcagctcaacaatgggagtgtttcttgctgcatctcataaactctgcggaagct
gaggttacgacgaaaagcatcagcccttcaatgatgaaagtcttccaacgaggcctttta
agtcaaagagacaaagaaggtccgaggcttactgaaagtggtttccagtttttgctaatg
gataccaatgcacaactctggtatatcatcagggagtatatcagtaattcagaggataga
ggtgtggattcagcagatctcatctcatttctgcttgaacttagctttcatgttactggc
gaggcgtataacgtgaacactttagatgatatacaaaggacaacagttaaagaccttgca
gacttgggcctcatcaaactccagcaggggaggaaagacagttggttcattccaactaaa
ctggctacaaacctctctataagcctgtcggatgcgtcatcaaggaaacagggatatgtt
gtggtggaaacaaacttcaggctatacgcctactccacctctaagctacattgtgaaatc
ttgaggctctttgccagggtagaatatcaacttccaaaccttattgtaggatccattaca
aaagagaacttatacaaagcctttcaaaatggcattacagccgatcagataatttcattt
cttcagcagaatgctcatcctcgtgttgccgaaagagtgccatctgtaccagaaaacgtc
acggatcagattaggctatgggaatcggatcttaatagggtcgagatgacgccagctcat
ttctttgatgacttcccatcaagggacatgtttgaagcagcctgcgatttcgcaagagaa
ttcagcagtttgctatgggaagactcgaaaaagatgcgccttatagtgaaatccgaaatc
tatgggcacatgaaagatcatctcagccgtcaaaaatag
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