Helianthus annuus (common sunflower): 110940531
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Entry
110940531 CDS
T05101
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
han
Helianthus annuus (common sunflower)
Pathway
han03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
han00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110940531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
han03400
]
110940531
Enzymes [BR:
han01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110940531
DNA repair and recombination proteins [BR:
han03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110940531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
110940531
NCBI-ProteinID:
XP_022037760
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All DBs
Position
5:complement(30684496..30695591)
Genome browser
AA seq
1140 aa
AA seq
DB search
MSGETKFSVMCSLFNWIQKSKSSKQKRSKFRKFLDTYCKPSDYFAAVRLILPNLDRERGS
YGLKESVLATCIIDALGMSRESADAVRLINWRKGGAKTGVNVGNFSLVASEVLQRRQGMM
SGGLTIKELNDLLDRLASNENRAEKTSVLSDLIKKTNAQEMKWIVMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCERLRDPHQRHKRQDIEVGKAVRPQLALRVANAASAWK
KLHGKEVVMECKFDGDRIQIHKNGQEIHFFSRNFIDHSEYTHGMSNVIMENVLVDRCILD
GEMLVWDTSTDRFAEFGSNQEIAKAAKEGLASERQLCYVAFDILYVGDTSVIHQSLKERH
ELLKKVVKPVKGRLEILVPDGGLNAHTTAGEPCWSRVARNVDDVDTFFKRTIENRDEGIV
LKDLESKWEPSDRSGKWLKLKPDYVRAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAERP
APNTYPRRFVSFCRVGTGLSDEELDAVVNKLKPYFRKYEYPKKGPPSYYKVTNSSKERPD
VWIDSPEKSIILSITSDIRTIRSEVFAAPYSLRFPRIDKVRDDKPWHECLDVESFVELVH
SSNHTTQWGETQHENKSKRSKSSRTADKKSGSLVPFHLLQTDVSHIKGETKIFSNMMFYF
ANVPSTHSLDSLHKMVAENGGTFSMNLNNAVTHCIAAESRGIKFQAAKRHGDVIHYSWLI
DCCSQKKLVPLQPKYFLVLSESSKKKLQEEIDEYSDSYFLDIDIKDLEQLLANINRSEES
KTIDYYKKKYCPLDKWSRFSGCCMYFYIPANCPSLDWEALLQVTMKRMKLEVCFNGGKVT
NCISNATHFVVMSLPGFNVDFNTILKSFSPSERRFIRNTSLHLVNCQWLEDCFEKDQILQ
EEEYSLRPSDLSESTLSDEHALETETLTSLKEEDKNEKKKTVNVEVPSLDNDGRKRKGRQ
PKARVNTRRKTGPTQPRRTRARSGNKAVKIHEYVSDEDEEASADESYVKLDDEEKHHELM
QDDTIVEDTEPLEKGINDTQITTEYVDNRDGDGDDDKNNYNNRESDKLEIMVDPVQAMLL
DMIPSLEPRNKETPVSDPPATKMETPSLDPNPNHGPDPGPGPSKKKKVSYRDLAMDWLKD
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggggagacgaaattcagcgtgatgtgcagcctattcaactggatccagaaatca
aaatcttcaaagcaaaagcgatcaaagttccggaagtttctggacacctactgtaaaccc
tcggattacttcgccgctgtcagactgatcctcccgaacctcgacagagaacgaggatcc
tacggcttgaaggagtccgtgctcgccacttgcattatcgatgctctcggtatgtccaga
gagtctgcggatgctgttcgactcattaattggcgtaaaggcggggcgaaaaccggtgtt
aatgttggcaatttctcacttgttgcttctgaggttttacagaggaggcagggcatgatg
tctggtggactaacaattaaagagctaaatgacttgcttgatcgattagcatctaatgaa
aatagagcagagaagacttctgttctttctgatctgatcaagaaaacaaacgcacaagaa
atgaagtggatcgttatgattatcctcaaagatctcaagttgggaattagtgaaaaaagc
atcttccatgaatttcacccggacgctgaggacttgttcaatgtcacatgtgacctaaaa
ctagtttgtgaaaggttgagggacccacatcaacggcacaagcgtcaggatatagaggtt
ggaaaagctgtacgccctcagctggctttgagggttgctaatgcagctagtgcatggaaa
aagcttcatgggaaggaagttgtcatggagtgcaaattcgatggtgatcgcatccaaatt
cataagaatggccaagagatacacttcttttcaaggaattttattgatcactcagaatat
actcacgggatgtcaaatgtaattatggaaaatgttcttgttgacaggtgtatacttgat
ggtgaaatgttagtttgggacacatcaactgaccgctttgctgaatttggttcaaatcaa
gaaatagccaaggcagcaaaggagggacttgctagtgagcgacagttatgctatgttgca
tttgatattctatatgttggagacactagtgttatccatcaaagtttaaaggaaagacat
gagctactaaaaaaggttgtgaagccagtcaaaggtcgtcttgagatcttggttcctgat
gggggtcttaatgctcatacaactgccggggaaccgtgttggtcacgtgttgctcgtaat
gtggatgacgttgatacatttttcaagcgaaccattgagaacagagatgaaggaattgtt
ttgaaagacctcgagtctaaatgggaacctagtgatcggagtggcaagtggttaaagttg
aaacctgactatgttagagctggatctgatttggatgttctcattatagggggatattat
ggatctggtcgccgtggtggacaggttgctcaatttttggtgggcctagcagagcgccca
gccccaaatacatatcctaggcggttcgtttccttttgcagagtgggtactgggctctcc
gatgaggagcttgatgctgttgtaaataaattaaagccttatttcaggaaatacgaatac
ccgaagaagggtcctcctagctattataaggtcacaaatagctccaaagagaggccagat
gtctggatcgacagtcccgagaaatcaataatactttctatcaccagtgacatccgtaca
atccggtctgaggtttttgctgctccatacagcttgagatttcctcgtatagacaaagtg
agagatgataaaccttggcacgaatgccttgatgtggaatcttttgtagaattggtgcat
tctagtaaccacacaacacaatggggagaaactcaacatgaaaataaatcaaaaagatca
aaatcatcaaggaccgcagataagaagagtggctctttggttccttttcatcttcttcag
actgatgtttctcatattaagggagaaaccaaaatattctcgaatatgatgttttacttt
gcaaatgtaccttccacacattccttggattcattgcacaaaatggtggctgaaaacggt
ggtactttttcaatgaatttgaataatgcggttactcactgtattgcggcagaaagtaga
gggatcaagtttcaagctgcaaaacgtcatggtgacgttatccattactcatggctgatt
gattgttgttcacagaagaaacttgttccgttacaaccaaagtatttccttgtgctttcc
gagtcatcaaagaagaaattacaggaagagattgatgaatattcagattcttactttctg
gatattgatatcaaagatttggaacagcttttggctaacataaataggtctgaggaatct
aaaaccattgactattataaaaagaaatactgtcctctggataaatggtcacgtttcagc
gggtgctgcatgtacttctacatcccagcaaactgtccgagtttggattgggaagcttta
cttcaagttaccatgaagaggatgaagcttgaggtttgctttaatggtggcaaggtcacc
aactgtatatctaatgctactcatttcgtagtcatgtctttgccaggatttaatgtggac
tttaatactatactaaaaagtttctcaccctctgagaggcgctttataaggaacacgagt
ttacatctggtcaactgtcagtggctagaagactgttttgagaaggaccagatactgcag
gaagaagaatacagtttgaggccctctgatttatccgaatcaactttatctgacgagcat
gcacttgagacggaaacattgactagcttgaaggaagaagataaaaacgagaagaaaaaa
acagtaaatgtagaagtaccatctttggataatgatggcagaaagagaaaagggagacag
cctaaagcgagagtaaatactagacggaaaacgggtcccacccagcctcgaagaacgagg
gcaagatctggaaacaaggctgtgaaaatacatgaatatgtatcggacgaagatgaggag
gcttctgcagatgaaagttatgtgaaacttgatgacgaagaaaagcatcacgaattaatg
caagatgataccattgtagaagatacagagccattagaaaaaggcattaatgatacgcag
ataacaacagaatatgttgacaatagggatggtgatggtgatgatgataagaataattat
aataacagagagagtgataaactggagatcatggttgacccggttcaggccatgttgcta
gacatgatccccagtttggaacccaggaataaggaaacacccgtctctgacccgcctgct
acgaagatggaaacccctagtttagaccctaatccgaatcatggtcctgatcctggtcca
gggccttcaaagaagaagaaagtcagttacagggatttggctatggattggctcaaggac
taa
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