KEGG   Halobacterium salinarum NRC-34001: LJ422_03600
Entry
LJ422_03600       CDS       T07949                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
hanr  Halobacterium salinarum NRC-34001
Pathway
hanr03030  DNA replication
hanr03410  Base excision repair
hanr03420  Nucleotide excision repair
hanr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:hanr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LJ422_03600
   03410 Base excision repair
    LJ422_03600
   03420 Nucleotide excision repair
    LJ422_03600
   03430 Mismatch repair
    LJ422_03600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:hanr03032]
    LJ422_03600
   03400 DNA repair and recombination proteins [BR:hanr03400]
    LJ422_03600
Enzymes [BR:hanr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     LJ422_03600
    6.5.1.6  DNA ligase (ATP or NAD+)
     LJ422_03600
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     LJ422_03600
DNA replication proteins [BR:hanr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    LJ422_03600
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     LJ422_03600
DNA repair and recombination proteins [BR:hanr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     LJ422_03600
   NER (nucleotide excision repair)
    Other NER factors
     LJ422_03600
   MMR (mismatch excision repair)
    Other MMR factors
     LJ422_03600
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: UEB92745
LinkDB
Position
668177..669862
AA seq 561 aa
MKFGSFATFAADIEATDADLDVVALVAELFDAADSDLDVVARFVQGRVFPAHSETKLDIG
PQLCYTALSRAAGRNVDADDIEARLAETGDIGAVAGSLDLGGQTGLAAFGGGDDHADGLT
VSGVADELAALAAAAGDGSQSEKVTLLFGLFNQCTSREARYLARLVLGEMRIGVGEGAVR
DAIAEAFDVPTAAVQRALQVSNDYGLVAETARDSGTDALDAMGLEVGRPVQAMLAQAGTV
TDALDEWHEAAVETKFDGARVQVHYDGDDVVLYSRNMENVTGALPELVEFVENNVTAPVI
IDGEAVAADEDGDPLPFQEILKRFRRKHDVAAMREEISVELHAFDCLHAPSADGGEDLLD
APFSDRHRRLRSVVDDASAVSEVLVTDDADEIAAFEATALEGGHEGIMLKNPAAPYTPGD
RGKDWLKRKPDVETLDLVVTGAEWGEGRRASVLGTFLLSARDAAGDGFETIGKVATGLTD
EELAALSDRLEPHVRSEDGQTVDIEPAVVLEVGYEEIQASPTYSSGYALRFPRFVSVRED
KTPTTADTIERVERLAAQQQQ
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgaagttcggctcgttcgccacgttcgctgccgacatcgaagccaccgacgccgacctc
gacgtggtggcgctggtcgcggagctcttcgacgcggccgacagcgacctcgatgtcgtc
gcgcggttcgtccagggacgcgtgttccccgcccactccgagacgaaactcgacatcggg
ccacagctctgttacacggcgctctcgcgggctgcgggccggaacgtcgacgcggacgac
atcgaggcacgactggccgaaaccggcgacatcggggccgtcgccggcagcctggacctc
ggcggacagaccggactcgcggcgttcgggggcggcgacgaccacgccgacggactcact
gtcagcggtgttgcggacgaactcgcggccctggcggccgccgccggcgacggcagtcag
tccgagaaagtcacgctcctgttcgggctgttcaaccagtgcaccagccgggaagcccga
tacctcgcgcggctggtgttgggtgagatgcgcatcggcgtcggcgagggggccgtccgg
gatgccatcgctgaggcgttcgacgtgccgactgcggccgtgcagcgcgccctccaggtg
tcgaacgactacggcctcgtggccgaaaccgcacgcgacagcggcaccgacgcgctggac
gcgatggggctggaggtgggccgccccgtgcaggcgatgctcgcgcaggccggcacggtc
acggacgccctcgacgagtggcacgaggccgccgtcgaaacgaaattcgacggcgcacgc
gtgcaggtgcactacgacggggacgacgtggtgctgtactcgcggaacatggagaacgtg
acgggggcgctcccggagctcgtggagttcgtcgagaacaacgtcacggcccccgtgatc
atagacggtgaggccgtcgcggccgacgaggacggcgacccactgccgttccaggagatc
ctcaagcggttccgccgcaagcacgacgtcgccgcgatgcgcgaggagatcagcgtggag
ctgcacgcgttcgactgcctgcacgcgccgagcgccgacggcggcgaggacctactggac
gcgccgttttccgaccgccaccggcgactgcgctcggtggtcgacgacgcgtcggcggtc
tcggaggtgctcgtgaccgacgacgccgacgagatcgcggccttcgaggcgaccgcgctg
gagggcggccacgagggcatcatgctgaagaacccggccgccccgtacacgcccggcgac
cgcgggaaagactggctgaagcgcaagcccgacgtggagacgctggatctggtcgtgacc
ggcgcggagtggggggaaggccgccgcgcgtcagtgctggggacgttcctgttgtccgcg
cgggacgccgccggcgacggcttcgagaccatcgggaaggtcgccaccgggctgacagac
gaggagcttgcggccctcagcgaccgcctggagccacacgtccgcagcgaggacggccag
acggtcgacatcgagccggcggtggttctcgaagtcggctacgaggagatccaggcgtcg
ccgacgtactcctcggggtacgcgttgcggttcccgcggttcgtctccgtccgcgaggac
aaaaccccgacgacggccgacaccatcgagcgcgtcgagcggctcgccgcccagcaacag
cagtga

DBGET integrated database retrieval system