KEGG   Haloplanus rubicundus CBA1112: DU484_13590
Entry
DU484_13590       CDS       T05557                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
haq  Haloplanus rubicundus CBA1112
Pathway
haq03030  DNA replication
haq03410  Base excision repair
haq03420  Nucleotide excision repair
haq03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:haq00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DU484_13590
   03410 Base excision repair
    DU484_13590
   03420 Nucleotide excision repair
    DU484_13590
   03430 Mismatch repair
    DU484_13590
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:haq03032]
    DU484_13590
   03400 DNA repair and recombination proteins [BR:haq03400]
    DU484_13590
Enzymes [BR:haq01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     DU484_13590
    6.5.1.6  DNA ligase (ATP or NAD+)
     DU484_13590
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     DU484_13590
DNA replication proteins [BR:haq03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    DU484_13590
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     DU484_13590
DNA repair and recombination proteins [BR:haq03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DU484_13590
   NER (nucleotide excision repair)
    Other NER factors
     DU484_13590
   MMR (mismatch excision repair)
    Other MMR factors
     DU484_13590
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase EccE
Other DBs
NCBI-ProteinID: AXG10794
UniProt: A0A345EF22
LinkDB
Position
complement(2446780..2448435)
AA seq 551 aa
MDFADFADRVAAIEAEPADLEVTSLVADLFVDAGADLPVVARLLLGRVVPAWDSTTLDVG
PSLCHEALARAAGPNVTADDVADRLADAGEIGAVAESLDLDGQQGLAAFGAADPEPLTVS
AVDSRLRDLAAADGAGSHDHKVEVLFGLFNRADSLSARYLARLVLSEMRIGVGEGIVRDA
IAEAFDVPVAAVERALQVENDCGAVAVRARDEGVAGLDAAELVVGRPVSAMLAQAGTAVD
ALDAWESVAVETKFDGARVQVHHDPAGDTRVFSRNLEDVTDALPEIVEFVAGIDVPVILD
GEALAVDDAGDPLPFQEVLRRFRRKHDVARMREEVTVEFRAFDCLHVDGTDLLDAPLLDR
RERLADVLSDGLSPLSVVDDAEAIADHEAAALDAGHEGIMLKNPDSTYTPGKRGQNWLKR
KPDVETLDLVVTGAEWGEGRRANHLGTFLLSARVGNGEFATIGKVATGITDERLAELSDR
LEPLIREQEGTEVDIEPRVVFEVGYEEIQASPTYGSGYALRFPRFVAVREDKTPAEADSL
ERVERLVGERS
NT seq 1656 nt   +upstreamnt  +downstreamnt
atggacttcgccgacttcgccgaccgcgtcgccgccatcgaggccgaacccgccgacctc
gaagtcacgtcgctggtcgcggacctgttcgtcgacgccggcgccgacctcccggtcgtc
gcccgcctgttgctcggacgcgtcgtccccgcgtgggactccacgaccctcgacgtgggg
ccctcgctctgtcacgaggcgctcgcccgcgccgccgggccgaacgtcaccgccgacgac
gtggccgaccgactcgccgacgccggcgaaatcggtgccgtcgccgagtcgctcgacctc
gacggccagcagggactcgccgcgttcggcgccgccgatcccgagccgctgaccgtctct
gcggtggactctcgactccgtgacctcgccgccgccgacggcgccggcagccacgaccac
aaggtggaggtcctcttcggcctgttcaaccgggccgattcgctctcggcgcgctatctg
gcgcggctcgtcctctcggagatgcggatcggcgtcggtgagggtatcgtccgcgacgcc
atcgccgaggcgttcgacgtgccggtcgcggccgtcgaacgcgccctgcaggtggagaac
gactgcggtgcggtcgccgtccgcgcccgcgacgagggagtcgcggggctcgacgcggcc
gaactcgtcgtcggtcggccggtgagcgcgatgctcgcacaggccggcacggcggtcgac
gccctcgacgcctgggagtcggtcgccgtcgagaccaaattcgacggcgcgcgggtgcag
gtccaccacgacccggcgggcgacacccgcgtgttctcccggaacctagaggacgtgacc
gacgccctgccggagatcgtcgagttcgtcgccgggatcgacgtgcccgtcatcctcgac
ggcgaggcgctcgccgtcgacgacgcgggcgacccgctccccttccaggaggtgctccgg
cggttccggcgcaaacacgacgtggcacggatgcgcgaggaggttacggtcgagttccgc
gcgttcgactgcctccacgtcgacgggacggacctgctcgacgcgccgctgctcgaccgg
cgcgagcggctggccgacgtgctctcggacggtctctcaccgctctccgtcgtcgacgat
gccgaggccatcgccgaccacgaggccgccgccctcgacgcgggccacgaggggatcatg
ctcaagaaccccgactcgacctacacgccgggcaagcgggggcagaactggctgaaacgc
aagccggacgtggagacgctggatctcgtggtcacgggtgcggagtggggggaagggcgt
cgggccaaccacctcggcaccttcctgctgtcggcccgggtcgggaacggcgagttcgcc
accatcggcaaggtggcgacgggcatcacggacgagcgactggccgagctgagcgaccgc
ctcgaacccctgatccgggagcaggaggggaccgaggtggacatcgagccacgggtcgtc
ttcgaggtgggctacgaggagattcaggcgtcgccgacctacgggtcgggctacgcgctc
cggtttccgcgattcgtcgcggtccgggaggacaagacgccggcggaggcggactcgctg
gagcgggtggagcggctggtcggggagcggagttga

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