Herminiimonas arsenicoxydans: HEAR1914
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Entry
HEAR1914 CDS
T00490
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase Mfd)
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
har
Herminiimonas arsenicoxydans
Pathway
har03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
har00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HEAR1914 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
har03400
]
HEAR1914 (mfd)
Enzymes [BR:
har01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HEAR1914 (mfd)
DNA repair and recombination proteins [BR:
har03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HEAR1914 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
CAL62064
UniProt:
A4G6C7
LinkDB
All DBs
Position
1922228..1925674
Genome browser
AA seq
1148 aa
AA seq
DB search
MSFDLKKSLPKPASRFVLPAVHGSADAYVLAQAAAELKSQKRMLAVVVANASDAQRLLAE
IPWFTGEGQEKPRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVLNGQCDVLIVPATTA
LVRMAPPAFLASYTFFFKQGEKLDEAKLKAQLQLAGYSPVKQVMSPGEYSVRGGLIDIFP
MGAVLPYRIDLFGDTIDTIRTFDADTQRSLYPVREVRLLPAREFPMDEEARTTFRGRWRE
IFEGDPSRSMIYKDIGSGIASAGIEYYLPLFFEETKTLFDYLPPDTTFALVGDIDEAIRR
FWSDTQSRYSFLKSDRERPLLAPEQIFLSDENFFTLAKPFGRWVIQSEDVASELSASLPN
IAVNRRADDPLVNLRSWLLQTDKRVLICAESNGRRETLQQYFNEYNLALTPADDFADFST
ASAKLMLGVAPMHAGFELGAALGGLAFITETELYAGSGRRIGSKKQEGATQVEAMVRDLS
ELKIGDPVVHVNHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGA
SPEDAPLHALGSGQWEKAKRRAAEKIRDTAAELLNLYARRALREGHSFEYSAHDYAAFAD
SFGFEETVDQAAAINAVIQDMTSGKPMDRLICGDVGFGKTEVALRAAFIAVLGGKQVAIL
APTTLLAEQHAQTFADRFADWPVRIAELSRFRSGKEITQAMKGMADGTIDIVIGTHKLLS
ADTKFSRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMALEGLRDFSI
IATAPQKRLAIKTFVRSENASVIREACLRELKRGGQVYFLHNEVETIENRKAMLEELMPE
ARIGVAHGQLHERDLERIMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ
LHQLRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGA
GEVLGDNQSGEMTEIGFQLYSDMLNEAVRSLKNGKEPDLAAPLATTTEINLHVPALLPST
YCGDVHERLSIYKRLANCKTQDAVNDLQEELIDRFGKLPDAAQALVETHRLRVAAVPVGI
IKIDAHAESATLQFEPNPPIDAMRIIELIQKNRHIKLSGQDKLRITANMPDLAARVLQIK
NTIRALLT
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgacctaaaaaaatctctccccaagcccgcttcgcgttttgttctgcctgct
gtacacggttcggcagatgcctatgtactggcgcaagcggcggcagaactgaaatcgcaa
aaacgcatgctggcagtcgtcgtcgccaatgccagcgatgcgcagcgcctgctggctgaa
attccatggtttaccggcgaagggcaggaaaaaccgcgctgtcatctattgcccgattgg
gaaaccctgccctacgatgccttttcgccgcatcaggatctggtatccgaacgactggca
acgctgtatgaagtattgaacggccagtgcgatgtcctgatcgtaccggccactaccgcg
ctggtacgcatggcgccgcccgccttcctcgcgtcttacaccttctttttcaagcagggc
gaaaagctggatgaggcgaagctaaaggcgcagttgcaactggccggctacagtccggtc
aagcaggtgatgtcgcccggcgagtattcggtgcgcggcggcctgatcgacatctttccg
atgggtgctgtgctgccataccgcatcgacctgttcggcgacacgatagacaccatacgc
accttcgatgcagatacgcagcgttcgctgtacccggtaagggaagtacgcctgctgccg
gcacgcgaattcccgatggatgaagaagcgcgcaccaccttccgcggtcgctggcgcgaa
atttttgaaggcgatccctcgcgttcgatgatctacaaggatatcggtagcggcattgcg
tccgccggcatcgagtattacctgccgctgttttttgaagaaaccaaaacgctgttcgat
tacctgccgccggacacgacctttgctctggttggcgatatcgacgaagccatacgccgg
ttctggagcgacacgcaatcgcgctatagcttcctcaaatccgatcgcgaacgcccgctg
ctggcgcctgaacaaatttttctcagcgatgaaaacttcttcacgctggcgaaacctttc
ggccgctgggtcatacaaagcgaagacgtcgcctccgagctgtccgcttcattgccgaat
atcgccgtcaatcgccgtgccgacgatccgctggtcaatctgcgttcctggctgctgcaa
accgacaagcgcgtgctgatctgcgccgaaagcaacggcagacgcgaaacgctgcagcag
tatttcaacgaatacaatctggcactcacaccagcagacgactttgccgacttcagcacc
gcgtccgccaaactgatgctaggcgtggcgcccatgcacgccggttttgaacttggtgca
gcgctgggcggactggcgttcattacggaaaccgagttgtacgccggctccggccgccgg
atcggcagcaagaaacaggaaggcgcaacgcaagttgaagcgatggtgcgcgatctgtcc
gagctcaagatcggcgatccggtggtgcacgtcaatcacggcataggccgctacatgggc
ctgaccagcatggatctgggcgaaggcgaaaccgaattcctgcatctggaatacgcgaag
gacaccaagctctacgtgccggtatcgcaactacatgtaatttcgcgatattccggcgct
tcaccggaagatgcgcctctgcatgcgctcggttccggccaatgggaaaaagccaaacgc
cgcgccgctgaaaaaatccgcgataccgctgcagagctgttgaacctgtacgcccgccgc
gccttgcgcgaaggccacagctttgaatactcggcccacgattacgccgcctttgctgac
agtttcggctttgaagaaaccgtcgatcaggcggccgccatcaatgccgtcatccaggac
atgaccagcggcaaaccgatggacaggctgatctgcggggacgtcggtttcggcaaaacc
gaagtcgccttgcgcgccgccttcatcgccgtgcttggcggcaagcaggtagcgattctg
gcgccgacgacgctgctcgcagaacagcatgcgcaaacctttgccgatcgctttgccgac
tggccggtgcgcatcgccgaactgtcgcgcttccgcagcggcaaggaaatcacgcaagcg
atgaaaggcatggccgacggcacgatagacattgtgatcggcacgcataaattattgtcg
gccgataccaagttctcgcgcctgggcctggtcatcatcgacgaagaacatcgcttcggt
gtaagacagaaggaaacactgaaagcactgcgcgcagaagtagatgtattgacgctcaca
gccacgcctatcccgcgcacgctgggcatggcactggaaggcttgcgcgacttctccatc
atcgccaccgcaccacaaaagcggctggcgatcaagactttcgtgcgcagtgaaaatgca
tccgtcatccgcgaagcctgcctgcgtgaattgaaacgcggcggccaggtctacttcctg
cacaatgaagtcgaaaccatcgaaaaccgcaaggcgatgctggaagaattgatgccggaa
gcgcgcatcggcgttgcccacggtcagttgcacgaacgcgacctggaacgcatcatgcgc
gatttcgtcgcgcagcgtttcaacatcctgctgtgtacaaccatcatcgaaaccggtatc
gacgtgccgactgcgaacaccatcatcatgcacagggccgataaattcggtctcgcgcaa
ttgcatcagttgcgcggccgcgtcggacgttcgcatcatcaggcctatgcgtatctgctg
gtgcacgacgtacaaggcttgagcaaactggcacaacgccgcctcgatgcgattcagcaa
atggaagaactcggcagcggcttctatctggccatgcacgatctggaaatccgtggtgcc
ggcgaagtactgggcgacaatcaatccggcgaaatgaccgagatcggcttccagctgtat
tccgacatgttgaacgaagccgtgcgttcgctgaagaatggcaaggagccggatctggcg
gcaccactggccaccacgaccgagatcaatctgcatgttcctgcgctgctgccaagcacc
tattgcggcgacgtgcacgagcggctatcgatctacaaacgtctggccaattgcaaaacg
caggatgccgtcaacgatctgcaggaagaattgatcgaccgtttcggcaagctgccggat
gcggcacaggcgctggtggaaacgcacaggctgcgtgtagcagcggtgccggtcggcatc
atcaagatagatgcgcacgcagaatctgcgactctgcagttcgagccgaatccacctatc
gatgcgatgcgcatcatcgaactgatacaaaaaaatcgtcacatcaagttgagcggtcag
gataaattgcgtattaccgcaaacatgcccgacctcgccgcacgcgtactccagatcaag
aacacgatacgcgcactgctaacataa
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