Halopseudomonas maritima: HV822_01555
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Entry
HV822_01555 CDS
T08633
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
harr
Halopseudomonas maritima
Brite
KEGG Orthology (KO) [BR:
harr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
harr03019
]
HV822_01555 (hrpA)
Enzymes [BR:
harr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HV822_01555 (hrpA)
Messenger RNA biogenesis [BR:
harr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HV822_01555 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
AAA_22
AAA_19
nSTAND3
NACHT
ABC_tran
ResIII
T2SSE
AAA_25
SLFN-g3_helicase
AAA_30
AAA_23
Motif
Other DBs
NCBI-ProteinID:
UJJ31889
LinkDB
All DBs
Position
complement(344003..347911)
Genome browser
AA seq
1302 aa
AA seq
DB search
MSAKNANAPDFSQVMANDRHRLQQQFRKLPADDQGKAAAAWLERFNASSERVAERARLIP
KIIYPDALPIADKREQIKAAIAEHQVVVIAGETGSGKTTQLPKICLELGRGTHGLIGHTQ
PRRLAARSVASRIAEELQTPLGELVGYQVRFTDQTSERSLIKLMTDGILLAETQHDRYLN
RYDTLIIDEAHERSLNIDFLLGYLKTILPKRPDLKVIITSATIDLERFSAHFDKAPVIEV
SGRTYPVDVWYRPLSAERDEEGNTVEDDLSIDQGIVAALSEIQQFERSQSKTPGDVLVFL
PGEREIRDTAEYLRKANLKHTEILPLYARLSAAEQQKIFASHAGRRVVLATNVAETSLTV
PGIVYVIDPGEARISRYSPRSKVQRLPVEAVSQASANQRKGRCGRVAPGICVRLYSEDDF
NGRPEFTDPEIRRTNLASVILQMLHLRLGRIEDFPFIEPPDGRAISDGFTLLQELGAVER
SGAMTDIGRQLARLPVDPRIGRMLLEGAAQQSLAEITVIASALAVQDPRERPLEKQQAAD
QAHAQWNEEGTDFVAFLNLWNGFEAQRQALTQSQLRSWCRRNFLNYLRLREWRETHRQIR
LTCRDLGLEENRQPASHEPVHKALLAGLLSHLGNKTEEGDFLGARQRRFLLHPSSGLAKK
KPAWVMVAELTETRRLYGRLAAKIDPTWVEPLAGHLVKTSHSEPHWEKKRGQVVAFEQVS
LYGLIIVPRRKVHFGPIDPVTSRELFIRQALVGGEWHGRAAFNKANQHLLAQLDELEAKA
RKRDIVVDDETLYRFFDQRIPDNIYQLASFERWLKRSSEKEPKLLHMTRDDLLQREASDV
SAQLYPDVLRWESVALPLSYHFEPNHEADGVTVRIPASLLRRIDPQRLDWLVPGLLFDKC
VALVRALPKAIRKNFVPVPDFVRAALERMPFADGSLTQALGRELTRMTGVRLDDDAWSDT
ELEDHLRMRIEVVDAAGKPICAGRDYSALCAQIEGLPLQAAPVEQPEQSAPSEAPGSYTL
PETLVRKQAGIAVNFYPAWVEQGEEVVEQLFDVPQLAQREHRLGLQRLLLQSPQLNEQAR
YLRQKLTAIKDAAIYYRDLGTQKQLTDDVLLGAIDRVFLPADAPLPRDAQTLGARLAAGR
ADWVPACEELAKQVLAILKQWHGLRKRFKGKVELAHALAMNDVREQLNHLIYPGFARAVP
GEWLSQYPRYLSAIEQRLDKLPGQVPRDRAWTDELQGLWQQYQALSERWQKEGRWDARLD
EWRWMLEEYRVSLFAQQLGTRMPVSGKRLGKLWREIQGGSSQ
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgtcagccaaaaacgccaacgcgcccgattttagccaggtcatggccaatgaccgtcat
cgtttgcagcagcagttcagaaagctgccggccgatgaccaaggcaaggcagcggcggcc
tggctggagcgtttcaacgcgtccagcgagcgggtggctgaacgggcgcggctgatcccc
aagatcatctatcccgatgcgttgccgattgctgacaagcgcgagcagatcaaggcggcg
attgccgaacatcaggtggtggtgattgccggtgaaaccggctcgggcaaaaccacccag
ttacccaagatctgcctggagctggggcgcggcacgcatggtctgattggtcacacccag
ccgcgtcggctggcggcgcgcagtgtggcatcacgtattgccgaagagctgcagacgccg
ctgggcgagctggttggctatcaggtgcgctttaccgatcagacctccgagcgctcgctg
atcaagctgatgaccgacggtatcctgctggccgaaacccagcacgaccgctacctcaac
cgctacgacacgctgattatcgatgaggcccacgagcgcagcctgaacatcgattttctg
ctcggctacctcaaaaccattctgcccaaacgtcctgatctcaaggtcattattacctcg
gcgaccatcgacctggaacgcttctccgcgcactttgacaaggcgccggtgatcgaggtg
tccggtcgtacctacccggtggatgtctggtatcgaccgctcagtgccgagcgcgatgag
gaaggtaataccgttgaggacgacctgagcattgaccagggcatcgtcgccgcgctgagc
gagattcagcagtttgagcgcagccagagcaagacgccgggtgatgtgctggtattcctg
ccgggcgagcgggagattcgcgacaccgccgagtatctgcgcaaggccaatctcaaacac
accgaaatcttgccgctgtatgcgcggctgtccgccgccgagcagcagaagatctttgcc
tcccacgctggacggcgcgtggtgctggccaccaacgtggcggaaacctcgctgacggtg
ccgggtatcgtctatgtgattgatccgggtgaggcgcgtatcagccgctacagcccgcgc
tccaaggtgcagaggctgcccgtggaggcggtgtcgcaggccagcgccaatcagcgcaag
ggccgctgcggccgggtggcgcccggtatctgcgtgcgtttgtacagcgaggatgacttt
aacggccggccggagtttaccgacccggaaattcgtcgcaccaacctggcctcggtgatt
ctgcagatgctgcatttgcgtctgggccggattgaggactttccgtttatcgagccgccg
gacgggcgcgcgatcagcgacggctttaccctgctgcaggagctgggagcggtggagcgc
agcggtgcgatgaccgatatcggccgccaactggcgcgcctgccggtcgacccgcgtatt
ggccgtatgctgctggagggcgctgcccagcaatcgctggccgagatcaccgtgattgcc
tcggcactggccgtgcaggacccgcgcgagcgcccgctggaaaagcagcaggcggctgat
caggcgcacgcccaatggaatgaggagggcaccgattttgtcgcttttctcaacctgtgg
aacggttttgaggcccagcgccaggcgctgacgcaaagccagctgcgcagctggtgccgg
cgtaactttctcaactacctgcgcctgcgcgagtggcgcgaaacccatcgccagatccgt
ctgacctgccgcgacctgggattggaagagaaccgccagccggcctcccatgagccggtc
cacaaggcgttgctggccggcttgctcagccacctgggtaacaagaccgaagagggcgat
tttctgggcgcgcgccagcgccgctttttgctgcatccatcctccgggttggcgaagaag
aagcctgcctgggtcatggtggctgagctgaccgaaacccggcgcctctatggtcgcctg
gccgccaagattgatccgacctgggttgagccactggccgggcacctggtcaagaccagc
cacagtgagccgcattgggagaaaaagcgcggtcaggtggtggcctttgagcaggtgtcg
ctgtacgggctgatcatcgtaccgcggcgcaaggtgcactttggcccgattgacccggtc
acctcgcgtgagttgtttatccgccaggcactggtgggtggcgagtggcatggccgtgcg
gcgttcaacaaggctaatcagcacctgttggctcagttggatgaattggaagccaaggcc
cgcaagcgcgatatcgtggtagatgacgaaaccctgtatcgcttctttgatcagcgcatc
ccggacaacatctaccagttggcgagctttgagcgctggctcaagcgcagcagcgagaaa
gagcccaagctgctgcacatgacccgcgatgatctgctgcagcgcgaggccagtgacgtt
agcgcccagctgtacccggacgtgctgcgttgggagtcggtggcgctgccgctgagctat
cactttgagcccaaccatgaagcggacggcgtgaccgtgcgcattccagcatccttgctg
cgccgcatcgacccgcagcgcctggactggctggtgccgggcctgctgttcgacaagtgc
gtggcgctggtacgcgcgttgcccaaggctattcgcaagaactttgtgccggtgcctgac
tttgtgcgcgctgcgctggagcgcatgccctttgccgatggtagcctgacccaggcactt
ggccgtgagctgacgcgcatgaccggcgtgcggctggacgatgacgcctggagcgatacc
gagctggaagaccacctgcgcatgcgcatcgaagtggtggatgcggccggcaaaccgatt
tgcgccgggcgcgattacagcgcgctctgtgcccagattgagggcctgccgctgcaggca
gcgccggtggagcagccggagcaaagcgctcccagcgaggcgccgggtagctatacgctg
ccagagacgctggtgcgcaagcaggcgggtatcgcggtcaacttttacccggcctgggtg
gagcagggcgaagaggtggtcgagcagctgtttgatgtaccgcagctggcccagcgcgag
caccgccttggtctgcagcgtctgctgctgcaaagcccgcagctcaacgagcaagcgcgc
tatttacgtcagaagctgactgccatcaaggacgcggctatctactaccgcgatctgggc
acccagaagcagttgaccgacgacgtgctgctgggagcgatagatcgggtgtttttgccg
gcggacgcgcccctgccgcgtgatgcgcaaacgcttggtgcgcgccttgcggcaggccgt
gctgactgggtgccggcttgcgaggagctggctaaacaggttttggcgatactcaagcaa
tggcacgggctgcgcaagcgcttcaagggcaaggtggaattggcccacgcgctggcaatg
aacgatgtgcgtgaacagctgaaccacctgatctatcccggctttgcccgagctgtgccc
ggcgaatggctgagccagtatccgcgttatctcagcgccatcgagcagcgcctggacaag
ctgccggggcaggtgccgcgggaccgcgcctggaccgatgagctgcaagggttgtggcag
caatatcaggctctgagcgagcgctggcagaaagaaggacgctgggatgcccggctggat
gagtggcgctggatgctggaggagtaccgcgtgtcgctgtttgcccagcagcttggtacg
cgtatgccggtatctggcaagcgtctgggcaaactgtggcgcgagattcagggggggagc
agccagtaa
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