Halomonas sp. SH5A2: HXW73_10110
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Entry
HXW73_10110 CDS
T09591
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hash
Halomonas sp. SH5A2
Pathway
hash03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hash00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HXW73_10110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hash03400
]
HXW73_10110 (mfd)
Enzymes [BR:
hash01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HXW73_10110 (mfd)
DNA repair and recombination proteins [BR:
hash03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HXW73_10110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QNI03253
UniProt:
A0A7G7Z932
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All DBs
Position
2159597..2163046
Genome browser
AA seq
1149 aa
AA seq
DB search
MPTFSLLAPPQPEGARDTLYWTSPPGSASALALARLAANAPLVVITPSTASAQRLEQDLS
FYSDVPVLPFPDWETLPYDSFSPHQDIVSARLRTLRQLQDGVRGLVLVPINTLMQRLPPV
DYIAGRVLTLNVGDKLDREPFREALSRAGYRAVETVYEPGEYAMRGALIDLFAMGMDAPI
RIDLFDDEIDTLRHFDPGSQRSTDKLDRIELLPAHEYSLSRSSIACFRELFETLFDVDPR
QCPLYNDALKGIPSPGLEHYLPLFFEQTASLFDHLTQDTRVALLPGVYAAAEQHWQSIES
RYANLGVDPTRPLLPPHRAFFPVSDVFAAIKQRPRVELSDDPEQRHALAPEAKPLPTVAI
DSRAKRPLKDFADFLERENDSRVLLVAESRGRREALEDVLAPLSLKLPHVDGFQDFLASD
QRIAITEGLIDSGLWLTDPPLAVISETELFGDVVRQSRRREKATDDNEFAVRHLSELRKG
APVVHQAHGVGRYIGLEALEAGGQANEFLALEYADGAKLYVPVDSLHLISRYSGADDELA
PLHKLGSDQWEKARKKAAEKIRDTAAELLDVYARREAQQGVVYEAPSDEYARFAGSFPFE
ETADQQAAIEAVIDDMTSPQPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTL
LARQHFENFRDRFADTAVNIGLISRFTHGKEMKKTLDDIKNGQTDIVIGTHKLLGNNVEL
PKMGLLIIDEEHRFGVAQKEKLKTLRAQIDILTLTATPIPRTLNMAMSGIRDLSIIATPP
PRRLSVKTFVQQHQDGVIKEALLREILRGGQVYFLHNEVKTIENTAERIRSLIPEARVAV
AHGQLPERNLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTIIIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLTPTPKAMTRDAVKRLEAISASDDLGAGFTLASHDMEIRGAGELLG
DEQSGQMETIGYTLYMEMLDRAVKAIRAGKTPNIDAPFDSGVEISLNLPALIPDDYIHDV
QQRLVMYKRIANTQSDAELKELQVELIDRFGLLPAPVKHLIRQTRLRQRAEQLGIKRLEA
GEKRGRIIFDAHTQVDPYTLVTLIQSSPQHYRLDGSDTLRFELDMEKIDQRFEHIESLLA
TLNQKVAAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgttttctctacttgctccgccccagcccgagggcgcgcgcgatacactttat
tggacatcgccccccggtagcgcgtcggcgcttgctctggcgcgtctggccgccaacgca
ccattagtggtgatcacgccaagtaccgccagcgcccaacgcctcgagcaggacctgtcg
ttttatagcgatgtaccggtattgcccttccctgactgggaaacactgccctatgacagt
ttttcaccgcaccaggatatcgtctccgcgcggctgcgcacgctgcgtcagcttcaggac
ggggtacgcgggctcgttctggtacctatcaatacgctgatgcagcgcttaccgcccgtt
gattacatcgccgggcgcgtcctgacgctgaatgtcggcgacaaactcgaccgcgagccg
tttcgcgaggcgctctcgcgagcaggctaccgggccgtggaaaccgtttatgagcccggc
gaatacgccatgcgcggggccttgatcgacctgttcgccatgggcatggacgcgcccatc
cggattgacctgttcgacgacgagatcgacaccctgcgtcattttgacccgggcagccag
cgctcaaccgacaagctcgacaggatcgaactgctgccggcccacgaatactcgctgagc
cgctcgtcgatcgcctgtttccgcgagctttttgaaaccctgtttgatgtcgacccgcgc
caatgcccgctatataacgatgcgctcaagggcatcccctcgccggggctggaacactat
ctgccgctgttttttgagcaaacggcgtcgctatttgaccacttgacccaggatacccgg
gtcgccctactgccgggcgtctacgccgcagccgagcagcattggcagtcgatcgaaagc
cgctacgccaacctgggagtcgaccccacacgaccgcttttaccgccacaccgcgcgttc
tttccggtcagcgatgtgtttgcggccatcaagcagaggccgcgggttgagctgagtgac
gacccagaacagcgccacgcccttgcgcccgaagccaagccactgccaacggtggcgatc
gactcccgggccaaacggccgctgaaagactttgccgatttcctcgagcgcgagaacgat
tcacgcgtactgctggttgccgagtcacgcgggcgacgtgaagccctcgaagacgtactg
gcgccattgtcgttgaagctgcctcacgttgacgggtttcaggacttccttgccagtgac
cagcgcatcgccattacggagggcctgattgacagcgggctgtggctgaccgacccgccg
cttgcggtcatcagcgagacagagctgtttggcgatgtggtccgccagagccggcgccgt
gaaaaagctaccgacgataatgagtttgccgttcgccatctctcggaactgcgcaaaggc
gcgccggtagtccaccaggcccacggcgtaggccgttacatcggcctggaagcacttgag
gcaggcggtcaggccaatgaatttttagcgctggagtatgccgacggtgccaaactgtat
gtaccggtcgatagcctccatctgatctcgcgctacagcggcgccgacgatgagctggcc
ccgctgcacaagctcggttcggaccagtgggaaaaagctcgcaagaaagccgccgagaaa
attcgcgacaccgccgctgaactgctggatgtctatgctcgtcgcgaagcccagcagggc
gtggtgtatgaagcacccagtgatgaatacgcccgttttgcgggcagcttcccgtttgaa
gaaaccgccgatcagcaagccgccattgaagcagtcattgacgacatgacatcgccgcaa
cccatggaccgggtcgtctgcggcgacgtgggttttggcaagaccgaagtggccatgcgc
gccgcctttctggccgttcagtcgggccgtcaggtcgtggtgctggtgcccaccaccctg
ctggcccgtcagcattttgagaacttccgtgaccggtttgccgacaccgcggtcaatatc
ggcctcatctcgcgctttacccatggcaaggagatgaaaaagacgctggacgatatcaag
aacggtcagaccgatatcgtgattggcacccacaagctacttggcaataacgttgaactg
cccaagatgggcctgttgatcattgatgaagaacaccgctttggcgtcgcccagaaagaa
aagctcaaaaccctgcgcgcccagatcgatatcctgacattgacagccacgcccatcccc
cggacgcttaacatggcgatgagcggcattcgtgacctatcgatcatcgcgacgccgccg
ccccgtcgcctgtcggtcaaaacctttgttcagcagcaccaggacggcgttataaaagag
gcgttgttgcgcgagattctgcgcggcggccaggtctactttctgcataacgaagtcaag
accatcgagaatacggccgagcgtattcgctcgttgattcctgaggcccgcgtcgccgtc
gcccacggccagctccccgagcgcaacctcgaacgggtaatgtccgacttctaccaccgc
cgcttcaacgtgcttgtctgctcgaccatcattgaaaccggcatcgacgtacccagtgcc
aataccatcatcattgaacgggccgacaagtttggcctggcgcagctgcaccagctgcgc
gggcgtgtgggccgcagtcaccaccaggcttatgcctacctgctcaccccgacgcccaag
gccatgacccgggacgccgtcaagcgcctggaggcgatcagtgcctcggatgacctgggc
gcaggcttcaccctcgcgagtcacgatatggaaattcgcggcgcaggtgagctgctggga
gacgagcagagtggccaaatggaaaccatcggctataccctttatatggaaatgctcgat
cgcgccgtgaaagccattcgtgccggaaaaacgccgaatatcgatgccccctttgatagc
ggcgttgaaatcagccttaatctgccagcactgattcccgacgactacattcacgatgtc
cagcagcggctggtgatgtacaaacgcattgccaacactcaaagtgacgccgagcttaaa
gaattgcaggtggagttgattgaccgatttggcttattaccggcaccggtaaagcatttg
atacgccaaacgcgactccgccagcgagccgagcagcttggcatcaagcggttggaggcc
ggtgagaagcgcggccggatcatcttcgacgcccacacccaggtggacccctataccctg
gtcacgcttattcaaagctcaccgcaacactaccgcctggacggttcggatacgttacgt
tttgaacttgatatggaaaaaatcgaccagcggtttgaacatatcgagtcactgttagcc
acactcaatcaaaaagtggcggcggcctga
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integrated database retrieval system
