Falsihalocynthiibacter arcticus: RC74_16765
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Entry
RC74_16765 CDS
T04275
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hat
Falsihalocynthiibacter arcticus
Pathway
hat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RC74_16765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hat03400
]
RC74_16765
Enzymes [BR:
hat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RC74_16765
DNA repair and recombination proteins [BR:
hat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RC74_16765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_16
UB2H
SecA_DEAD
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AML52696
UniProt:
A0A126V498
LinkDB
All DBs
Position
complement(3410627..3414118)
Genome browser
AA seq
1163 aa
AA seq
DB search
MGSENDVAISTPKHITQSGAPEGYDAHLLLAELAKSNGAVIHVARDAKRLAALKAALAFF
APDTAVLSFPAWDCLPFDRMSPNADTSAARMAVLAALVHDMPKRFILLTTLSAATQFVPA
RDVLRKAAFSAQVGERINIDQLRAFLVRMGFTQAPTVTEPGDYAVRGGIIDIFPPGDTGP
IRMDFFGDTLDGLRRFDAETQRTTDTIKNIELAPVSEVILDDAAITSFRQNYRTEFGAAG
TDDPLYEAVSAGRKHQGVEHWLPFFYDRLETLFDYIPTASVVLDDQVGPARLARWDGIVD
QYETRRLAMSAKMRLDSVYKPCPPEKLYLDDVVWGKAVENHRVVTLAILPQSTGHGVVDA
GGRIGRNFSPERQLENANLFEALGQHINERRKSDQVVVASFSEGARERLVGLIADEGVEG
AQLIKDFRDIPDGKGGVFLAVWPLEQGFYAEGLTVISEQDVLGDRLIRSTKRRRRADNFL
TETQSLSAGDLVVHVDHGVGRFTGLETITAMGAPHECLLLEYAGGDRLYLPVENIELLSR
YGHDEGMLDKLGGGAWQAKKAKLKERIRAVAEKLIRIAAERALRRAPIMSPPDGMWDAFA
ARFPYTETDDQMSAIHDTLDDMESGRPMDRLICGDVGFGKTEVAMRAAFVAAMSGAQVAV
IAPTTLLARQHYKSFAERFRGFPIEVHQLSRFVGAKEAHNTRESIKRGTADIVIGTHALL
AKTVRFQNLGLLVIDEEQRFGVSHKERLKEMRTDIHVLTLTATPIPRTLQMSLSGVRDLS
IIGTPPVDRLAIHTYVSEFDSVTIREGFLREHYRGGQSFYVVPRIADLPEVEDFLRTQLP
EVSYVVAHGQMAAGELDDRMNAFYDGKYDVLVATTIVESGLDIPTANTLVVHRADMFGLA
QLYQIRGRVGRSKTRAYAYLTTKPRMPLTPTAEKRLRVLGSLDSLGAGFTLASQDLDIRG
AGNLLGEAQSGHVREVGFELYQAMLEEAIANIRSGAGEGLSDDNDQWAPQINLGVPVLIP
ETYVPDLDVRLGLYRRLSGLTLKVELEGFAAELIDRFGKLPREVNTLLLVVRIKAMCKRA
GIAKLDAGPKGVTIQFHNDKFASPQGLVEFISDQKGNAKVRDNKIVVQREWANENDKIRG
AFGVAKDLAEKLIAEKKRTKPRS
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggggtcggagaacgatgtggccatttcaacgcccaagcacataacccaaagcggggcg
cccgaaggctatgacgcgcatcttttgttggcggaattggccaagtccaacggcgcggtt
atccatgtggcacgcgatgcaaaacgcctcgcagcgctcaaggcagcgcttgctttcttt
gcgcctgacacagcggttttgagctttcccgcgtgggattgtttgccgtttgatcgtatg
tcgcccaacgccgatacctcggcggcgcggatggcggttttggccgcccttgtgcatgac
atgccaaaacgctttatccttttgacaacgctttctgcggccacgcaatttgtccctgcg
cgtgatgttttacgcaaagcggcgttttcggcacaggttggcgagcgcatcaatatcgac
cagttaagggcgtttctggtgcggatgggcttcacccaagcgccaaccgtcactgaaccc
ggcgattatgcggtgcgcggcggcattatcgacatctttccacccggcgataccggcccc
attcggatggatttctttggtgatacgctagacggtttgcgccgctttgacgccgaaacc
cagcgcaccacagacaccatcaaaaacatcgaactcgcgcccgtttccgaagtcatttta
gacgacgccgcgatcaccagttttcgccagaattatcgcacagaatttggcgctgcgggc
accgatgacccgctctatgaggcggtttccgcagggcgtaaacatcaaggtgtcgagcat
tggttgccgttcttttacgaccgtcttgagaccctttttgattatattccaacagcttct
gtggtgcttgacgatcaagtcggtcccgcgcgtcttgcgcggtgggacgggattgtagat
caatatgaaacgcgccgcctcgcgatgtccgcaaaaatgcgccttgatagtgtgtacaag
ccttgtccgcccgaaaagctctatctcgatgatgtggtttggggcaaagctgtagagaac
caccgcgttgtcaccctcgcgatattgccgcaatccacaggccatggcgtcgtggatgcg
ggtggccgcatcgggcgcaacttcagtcccgaacgccaactcgaaaacgcaaatctgttc
gaagccctcggccaacacatcaacgaacgccgcaagtccgatcaagtcgttgtcgccagt
ttctcggaaggggcgcgcgaacgtctagtggggttgatcgcggatgagggcgttgaaggc
gcacaactgatcaaggatttccgcgatattccggacggcaaaggcggcgtttttctagcc
gtttggccgttggaacagggtttttacgccgaaggcttgacggttatttccgagcaggac
gtgctgggcgaccgcctgatccgctccaccaaacgccgtcgccgcgccgataatttccta
accgaaacccaaagcctctccgctggcgaccttgttgtccacgtcgatcacggggttggg
cgcttcactggccttgaaacaatcacggccatgggcgcgccccatgaatgtttgctatta
gagtatgcgggcggcgaccgtctttacctacccgttgaaaatattgagcttttaagtcgt
tatggccacgacgaaggcatgctagacaagcttggcggcggcgcgtggcaagccaaaaaa
gccaaactcaaagagcgtatccgcgcggttgccgaaaagcttatccgtattgccgccgaa
cgcgccctgcgccgtgcccccatcatgtcgcctcctgatggcatgtgggacgccttcgcc
gcgcgcttcccctatacggaaaccgacgatcaaatgtcggccattcacgacacattggat
gacatggaaagcggccgccccatggaccgcctgatttgcggcgatgtgggctttggcaaa
accgaagttgccatgcgcgcggcgtttgttgcggcgatgtccggcgcccaagtcgcggtg
attgcgcccacgacgttgctcgcccgccaacactacaaaagcttcgccgaacgcttccgt
ggcttcccgattgaagtgcaccagctgagccgatttgtcggcgcaaaagaagcccacaac
acccgcgaatccatcaagcgtggcaccgccgatatcgtgatcggcacccatgcgcttctt
gcgaaaaccgtgcgttttcaaaatcttggactacttgtaattgacgaggaacaacgtttc
ggcgtcagtcacaaagagcgcctcaaagagatgcgcaccgatattcacgtgctcaccctt
acagccacgccgattccgcgcacgctgcaaatgagcctttctggcgtgcgggatttgtcg
attatcggcacacctccggtcgaccgtctggcgatccatacctatgtcagcgagtttgac
agcgtcacaattcgcgaaggctttttgcgcgaacattatcgtggtgggcaaagtttttac
gtggtgccccgtattgcggacctgcccgaagtggaggatttcttgcgcacccagcttccc
gaagtcagctatgtcgtggcccacgggcaaatggcggcaggcgaacttgatgatcggatg
aacgcgttttacgacggcaaatatgatgtgctcgtcgcgaccacgattgtcgaaagcggc
ttggatattccaacggccaatacgctggtcgtgcatcgcgccgatatgtttgggttggcg
caattgtaccaaattcgtggtcgtgtgggccgcagcaaaactcgtgcctatgcctatctc
accaccaaaccgcgtatgcccctgacgccaacggccgagaaacggttgcgggttttggga
agtctggacagtcttggcgcgggcttcactctggcgagccaagatctggacattcgcggc
gcgggcaacttgttgggcgaggcccagtcaggacatgtgcgcgaagtcgggtttgaactc
taccaagcgatgttagaggaagcgattgccaatattcgatcgggggcaggcgaggggctt
tcggatgacaacgatcaatgggcaccacagattaaccttggcgttccggttctgatcccc
gaaacctacgtgcccgatttggatgtgcgtttgggtctgtaccggcgcctgtctggtctc
acgttgaaggtcgaacttgaaggatttgccgccgaactcattgatagatttgggaaatta
ccacgcgaagtaaacactttgctgctggtggtgcggattaaagcaatgtgtaaacgggca
gggatcgccaagctggatgcagggcccaagggcgtgactatccaattccataatgataaa
tttgcctcgccccaaggtctggtggagttcatatcggatcaaaaagggaatgccaaagtg
cgcgacaacaagatcgttgtgcaacgtgaatgggccaatgaaaacgataaaattcgtggc
gcctttggggttgccaaagacctcgcggagaaactcatcgccgagaaaaaacggaccaaa
ccaagaagctag
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