Hafnia alvei: AT03_01865
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Entry
AT03_01865 CDS
T03425
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hav
Hafnia alvei
Pathway
hav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT03_01865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hav03019
]
AT03_01865
03400 DNA repair and recombination proteins [BR:
hav03400
]
AT03_01865
Enzymes [BR:
hav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AT03_01865
Messenger RNA biogenesis [BR:
hav03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AT03_01865
DNA repair and recombination proteins [BR:
hav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AT03_01865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
AIU71260
UniProt:
A0A097QXQ6
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All DBs
Position
385377..387215
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AA seq
612 aa
AA seq
DB search
MATAAVINAEMLAEQVLRDTFGYQQFRPGQQTIINAAIAGRDCLVVMPTGGGKSLCYQIP
ALVMDGLTLVVSPLISLMKDQVDQLQANGVSAACLNSTQNREQQQEVYAGCRSGAIKLLY
IAPERLMMDNFLDQLPHWRPALLAVDEAHCISQWGHDFRPEYSALGLIKQRFPEIPVIAL
TATADDATRNDIERLLSLNDPLVQVSSFDRPNIRYTLIEKFKPLDQLIRFVQEQRGKSGI
IYCNSRAKVEDTTARLQSRGFSVGAYHAGLDHEHRSSVQEAFQRDDLQIVVATVAFGMGI
NKPNVRFVVHFDIPRNIEAYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPEGQQ
KEIERHKLNAMNAFAEAQTCRRLVLLNYFGEGRQESCGNCDICLDPPKRYDGLEDAQKAL
SAIARVGQRFGIGYVVEILRGANNTRIREFGHDKLKVYGLGRDHTTEHWVSVLRQLIHLG
LVTQNIAMHSALQLTESARPVLRGEVPLQLAVPRVINLKSRSSSSHASKNYGGNYDRKLF
AKLRKLRKAIADEENIPPYVVFNDATLLEMSEQMPIRASELLSINGVGQRKLDRFGAPFM
TLIREHVDGDDE
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
gtggcaacggcagccgtaatcaatgcagaaatgctggcagagcaggttttgcgcgatact
tttgggtatcagcagttccgtcctggacagcaaactatcatcaatgctgcgatcgcggga
cgggattgtctggttgtgatgccaaccggaggcggcaagtctctgtgttatcaaatccct
gcgttggtgatggatggcttaacgctggtggtttctccgttgatttccttgatgaaagat
caggtcgatcagctacaggcgaacggcgttagcgcggcctgtcttaactccacgcagaat
cgtgaacagcagcaagaggtatacgctggctgtcgcagtggggcgataaagcttctctat
atcgcgccagaacgactgatgatggataacttcctcgatcagcttccgcactggcgacct
gcattattggcggtagatgaagctcactgtatttcacagtggggtcatgatttccgtcct
gaatacagcgcgttaggcctgattaagcagcgtttccctgaaattccggttattgcgctc
acggccaccgccgatgacgccacgcgtaatgacatcgagcgtttgctgtcgttaaacgat
ccgctggttcaggttagcagttttgaccgcccaaacattcgctacacgctcatcgaaaaa
tttaaaccgctggatcaactgatccgtttcgtacaggaacagcgcggcaaatcgggcatt
atttactgtaacagccgagccaaagtcgaagacaccacggcgcgtttgcaaagccggggc
tttagcgtcggggcgtatcacgcagggctcgatcacgaacatcgctcttcggtacaggaa
gcatttcaacgcgacgatctgcagattgtggtggcaacggttgcgttcggcatgggcatt
aacaagcccaacgtgcgttttgtggtgcactttgatattccacgtaatatcgaagcttac
tatcaggaaaccggtcgcgctgggcgcgatggtttacccgctgaagccgttctgctctat
gaccctgctgatatggcttggctgcgccgttgtttagaagagaaacccgaagggcagcag
aaagagattgaacgccataagctaaacgcgatgaacgctttcgctgaggcgcaaacctgc
cgtcgtttagtgctgctgaattactttggcgaaggacggcaagaatcctgcggcaactgc
gatatttgtctcgatccgccaaaacgttacgatgggctagaggacgcgcaaaaggcgctg
tcagcgattgctcgggttggtcagcggtttggtatcggttatgttgttgagatcctgcgc
ggggcgaataacacccgtattcgcgagtttggtcacgacaagctgaaagtctatggccta
gggcgtgaccatacgaccgaacactgggtcagcgtattacgccagcttattcatttgggc
ttagtgacgcaaaatattgcgatgcattccgcgttgcagctgactgaatcggcgcgtccg
gttttacgcggcgaagttccacttcagttggccgtgccacgcgtcatcaatctcaagtcg
cgcagcagcagtagccatgccagcaaaaactacggtggaaactatgaccgcaagctgttt
gccaagctgcgtaagttacgcaaagcgattgctgacgaagagaatatcccgccatacgtg
gtatttaacgatgctacgttgctagaaatgtcagagcagatgccgattcgcgccagcgaa
ttgctgagcattaacggtgtggggcaacgtaaactggatcgctttggtgcgccgtttatg
acgctgatccgagaacacgttgatggcgatgatgagtag
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