Halobacteriovorax sp. BALOs_7: BALOs_0049
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Entry
BALOs_0049 CDS
T05649
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hax
Halobacteriovorax sp. BALOs_7
Pathway
hax03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hax00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BALOs_0049 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hax03400
]
BALOs_0049 (mfd)
Enzymes [BR:
hax01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BALOs_0049 (mfd)
DNA repair and recombination proteins [BR:
hax03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BALOs_0049 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
TRCF
ResIII
RecG_dom3_C
DUF5771
Motif
Other DBs
NCBI-ProteinID:
AYF43073
LinkDB
All DBs
Position
complement(51699..55193)
Genome browser
AA seq
1164 aa
AA seq
DB search
MLKNDMDLFTPLRTKLLSWLDTKQHDLTIDGINREYWAFFKFLLNQNKSYDHPPNLLIFE
NQDEAEQYYELVKSSFLKINLVFYPGLDASPYSGMYSSESAQLARHSALKKIISRKNSDL
TVITSIEALSLKVPPKEFFNETTFKIEESDIISPDELAGKLVSLGYTSSFTVEEQGTFSK
KGEIFDIYPVGMHPIRIHYFDEMIEEIFEIDKETLKTIKDKKVQSLTITPGPSIFCESHY
SNNLRDNLPRPRANQRELLEARNELFSKLSNGMLFENHPVYTPLFFKPNETESLLDYIDE
NWLTIVFDRDNTEDNLTNYYDELSTDFEETEELLPSPEYFYDLSTIDRLRKENVLNLNHL
NINAQIDHDTNVVDLGLAPFKSYISKFDINYHSKKEFLSGLFDHLKNDFKYSGKIIFTIQ
NDNSKNEIKHLIEMFELSGEIQSRIDFINFKLTEGFYYPSDKLLVISDSDLFAIRRDKAK
VSKIKDIDLFAEQLASLKEGDYVIHSKHGIGKYLGLEAMDIGGSKSDYLVILYKGNDKVF
VPIYKMNLIQKHAGGEVKVNVDSLRTNKFSALKARAKDSVKKLAFDLLKLQAERASTQAF
SFSPPDHDYKEFELSFPFNETPDQKNAIDSVIDKMQAKSAMDFLVCGDVGFGKTEVAMRA
AFKAVLDGKQVAILVPTTVLALQHYNSFVKRFEKFPVRIDYLSRFKTGKDEKETKEKLEK
GEIDIIVGTHKLLGKTIKFKDLGLVVVDEEQRFGVAHKNKLKLLKSSVDFLTLTATPIPR
TLQLSFLGLKDLALIKTAPPRRQSIKTYLIKEDDHTIQSAINRELKRGGQVFIVHNRVQD
IENYTAYIRELVPDAKIVYAHGQLPEKELESRISAFYNGAYQILISTTIIESGIDIPNAN
TMIVDRADRYGLAQLHQLRGRIGRSDKKAYCYFVVPNNRNITEVAAKRLKALQTYADMGS
GFQIANCDLEIRGAGDILGAHQSGHIEAIGLELYMELLTEAIQELRGEKKIIKKDIEINT
PFAAFIPAHFISESSERLKYYKQLSNSTSIDEITALKETIFDIYGPGPEEFNQLIAILEA
RSYLMPCGIKSAQLMDNSIIFQFDRDMVEANEELRNNILNNFLGMPRKYRFTPDFKLIFT
NKTTISPSSLVEFCQEIAEKIVPS
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaaaacgacatggatttatttacaccactgcgcacaaagctattatcttggtta
gacaccaagcaacatgacctcactattgatggtataaacagggagtactgggcgttcttc
aagtttttacttaatcaaaataagagctatgaccatccaccaaatttattgattttcgaa
aatcaagatgaagctgaacagtattatgaattagtaaaatctagttttttaaaaataaat
cttgttttttatcctgggcttgacgcatcaccatattctggaatgtattcatcagaaagt
gcacaacttgcccgacactcagcattaaaaaaaataatatcaagaaaaaatagtgaccta
acagtcattacatcaatagaagcattatctttaaaagtacctccaaaagaattttttaat
gaaacaacttttaaaattgaagaatcagatattatctctcctgatgaattggcaggaaaa
ttagtatcacttggctacacttcttcattcactgttgaagagcaaggtacattttctaaa
aaaggtgaaatctttgatatctatccagtaggaatgcacccgatacgtattcactacttt
gatgaaatgattgaggaaatttttgaaatcgataaagagactttaaaaacaattaaagac
aaaaaagttcaaagcttaacgattactccaggcccttcgattttttgtgaatctcattat
tcaaataatcttcgcgataacctaccaagaccaagggccaaccaaagagaacttcttgaa
gctagaaatgaattattttcaaaactttcaaacggaatgctctttgaaaatcacccagtc
tacacaccattattttttaaaccaaatgaaacagaatcattactcgattatattgatgag
aactggttaactatcgtttttgatcgagataatacagaagataatctcacaaattattat
gatgaattatcaacagattttgaagaaactgaagaactacttccttcaccagaatatttc
tatgacttatcaactatcgatcgtttacgtaaagagaatgttcttaatttaaatcatcta
aatattaatgctcaaattgatcatgatactaatgtagtggatctaggtcttgcacctttt
aagtcttatatctctaagtttgatattaattatcattcaaaaaaagagttcttatctgga
ttatttgatcatttaaaaaacgactttaaatattcaggtaaaattatttttactattcaa
aatgataattcaaaaaatgagatcaaacatttaattgaaatgtttgaattgtctggtgaa
atacaaagtagaattgattttattaattttaaactgactgagggattctattaccctagc
gataaattactagttatctcagacagtgatctctttgctattcgtcgagataaagcaaaa
gtttctaagattaaagatattgatctctttgctgaacaattagcatcactaaaagaaggc
gactatgtcatccactctaaacatggtattggaaaatacttaggtcttgaggccatggat
attggcggttcaaaatccgactaccttgtcattctatataaaggtaacgataaagttttt
gttcctatctataaaatgaaccttatccaaaagcacgctggtggtgaggtcaaggtcaat
gtcgatagtttaaggacaaataaattctctgcgcttaaagcacgtgctaaagactctgta
aaaaaactagcttttgaccttttaaagttacaagctgaaagggcgtcaacacaagccttt
tcattttcaccacctgaccatgattataaagagtttgagttatcatttccatttaatgaa
actcctgatcagaaaaatgctattgattcagtaattgataaaatgcaggcaaagtctgca
atggattttcttgtttgtggagatgttggatttggaaagacggaagttgctatgcgtgca
gcttttaaagcagtacttgatggaaaacaagttgcaatactagttccaacaacagttcta
gctcttcagcattataattcatttgttaaaagatttgagaagttccctgttcgtatcgat
tacttatcacgttttaaaactggtaaagatgaaaaagaaacaaaagaaaaacttgaaaag
ggtgaaattgatattatcgttggaacacataagctcctcggtaaaacgatcaaatttaaa
gacctaggacttgttgttgttgatgaagagcaacgctttggggttgcccataagaataaa
ttaaaacttttaaaatcatcagttgatttcttaactctaactgcaacaccaattcctaga
acactacaactttcattcttaggtttaaaagatcttgctttaattaagaccgccccacca
agaaggcagtcgattaaaacttatcttataaaagaagacgatcacactatacagtcggca
attaatcgagaacttaaacgaggtggacaagtttttattgttcacaatcgagttcaagat
attgaaaactatactgcatatattagagagctagtaccggatgccaaaatcgtttacgct
catggacagctaccggaaaaagagcttgaatcacgcatctctgctttttataacggtgct
taccagatcctaatttccacaactatcatcgaatctggaattgatattccaaatgcaaat
actatgattgtggatcgtgccgatcgatatggccttgctcaattacaccaattacgtgga
cgcattggacgctctgataaaaaagcttattgttactttgttgttccaaataatcgcaat
attacagaggttgcggccaaacgattaaaagctctacaaacttatgcagacatgggaagt
ggttttcaaattgcaaattgtgatcttgagattcgcggggccggagatatacttggtgct
caccaatcagggcatatcgaagcaattggtctcgaactttatatggaacttttaactgag
gccattcaagaattgcgaggagaaaagaaaatcatcaaaaaggatattgaaatcaatact
ccttttgcggcattcattccagctcactttatcagtgagtcgagtgagagacttaaatat
tacaagcaactatcaaactccacatcaattgatgaaatcacagctctaaaagaaacaatc
tttgatatctacgggccaggtcctgaagaatttaatcaattgatagcaattcttgaagca
cgttcatatctaatgccatgtggaataaaatctgctcaacttatggataattcaatcatt
tttcaatttgatcgcgacatggttgaggccaatgaagagcttagaaataatattttgaac
aactttctcggtatgccacgtaaatatcgtttcacaccagactttaagttgatttttacc
aataaaacgacgatatctccgagctctttagtcgagttctgtcaggaaattgcggaaaaa
atagttccatcttag
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