Halothiobacillus sp. LS2: A9404_10135
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Entry
A9404_10135 CDS
T04441
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
haz
Halothiobacillus sp. LS2
Pathway
haz02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
haz00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
A9404_10135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
haz03021
]
A9404_10135
Transcription machinery [BR:
haz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
A9404_10135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Motif
Other DBs
NCBI-ProteinID:
ANJ67688
UniProt:
A0A191ZIK8
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All DBs
Position
2293249..2295078
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AA seq
609 aa
AA seq
DB search
MHENQQASIKQLIAHGREQGFLTYAEISDHLPETLVDADQIEDIIAMIQEMGISVFEVAP
DGDDLGLSEESRVANDEDAAEEAVAVLASQVDAEFGRTTDPVRMYMREMGTVDLLNRQGE
IEIAKRIEEGLREVTRALAFYPPTIETLLAHYAMVEAGEFRLQDLIVGINEPDIEPPVDD
EEDKPIVTTTTKVANDDDESEDEEDSEEEETVVDNSLDPEVVRAHMLEIQKLAERLDCRD
AEYLDSLADQLVQLKLNPAFNEKLLEQIRQAIARVRLLEKQIMQHAVDKGGIKRETFIEA
FRSNESDISWIDAATKGKPTARFIQVRPEIERLQKRLNTVERDSKLSVAQTREVYRLITL
GEAKARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKF
STYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAVRM
DLPEDKIRKVLKIAKEPISMETPIGEDDDSSLGDFIEDQGAISPMDSATNASLSEIVREI
LASLTPREAKVLMMRFGIGMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSERL
RSFIEMHVD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgcacgaaaatcagcaggcaagcatcaagcaactcatcgcccatggtcgggagcagggc
ttcctgacctacgctgaaatcagcgaccatctgccggaaacgctggtggacgccgatcag
atcgaagacatcatcgccatgatccaggagatgggcatctccgtgttcgaggtggcgccg
gacggcgatgatctcgggctttcggaagagtcccgcgtcgccaacgacgaagatgcggcg
gaagaagccgtggccgtgctcgcttctcaggtcgatgccgaattcggtcgcacgaccgac
cccgtacgcatgtacatgcgtgaaatgggtaccgtcgatctgctgaaccgccagggcgaa
atcgaaattgccaagcgcatcgaagagggcttgcgcgaagtgacccgtgcactggcgttc
tatccgcccaccatcgaaaccctgctggcccattacgccatggtcgaggccggcgaattc
cgcctgcaggatttgatcgtcggcatcaacgaaccggatatcgagccgccggtcgacgat
gaggaagacaagccgatcgtgaccacgaccaccaaggtggccaacgacgatgacgaaagc
gaggacgaggaagacagcgaagaagaggaaaccgttgtcgacaacagcctcgatcccgaa
gtcgtccgggcgcacatgctcgagatccagaagctggccgagcgcctggattgccgtgat
gccgaatatctggattcgttggcggaccagctcgttcagctcaagctgaacccggccttc
aacgaaaagctgctggagcagatccgtcaggccatcgcccgcgtgcgcctgctggagaag
cagattatgcagcacgcggtcgacaagggcggcatcaagcgcgagaccttcatcgaggcc
ttccggagcaacgaatccgacatcagctggatcgacgcggccaccaagggcaagcccacg
gcgcgcttcatccaggttcgtcccgagatcgaacgcctgcagaagcgactcaatacggtc
gagcgcgacagcaagctgagcgtggcgcaaacccgcgaagtctatcgtctgatcaccctg
ggcgaagccaaggcgcgtcgtgccaagaaggaaatgatcgaggccaacctgcgcctggtg
atctccatcgccaagaaatacaccaaccgcggcctgcagttcctggatctgatccaggaa
ggcaacatcggcttgatgaaggcagtggacaagttcgaataccggcgtggctacaagttc
tcgacctatgcgacctggtggatccgtcaggccatcacccgttcgatcgccgatcaggcg
cgcaccatccggattccggtgcacatgatcgagacgatcaacaagctcaaccgcatcagc
cgtcagatgctgcaggaaatgggccgcgagcccacgcccgaggaactggcggtgcgtatg
gacttgccggaagacaagatccgcaaggtgctgaagatcgccaaggaaccgatttcgatg
gagaccccgatcggcgaggacgacgattccagcctgggtgatttcatcgaagaccagggc
gcgatttcgccgatggactcggcgaccaacgccagtctctccgagatcgtgcgggaaatc
ctcgcctccctgacgccacgggaagccaaggtgctgatgatgcgcttcgggatcggcatg
aacaccgatcacaccctcgaggaagtcggcaagcagttcgacgtgacgcgcgagcgcatc
cgtcagatcgaagccaaggccctgcgcaaactgcggcatccctcgcgttccgagcggctg
cgcagtttcatcgagatgcatgtcgattaa
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