Hyalella azteca: 108676081
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Entry
108676081 CDS
T07535
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hazt
Hyalella azteca
Pathway
hazt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hazt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108676081
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hazt03400
]
108676081
Enzymes [BR:
hazt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108676081
DNA repair and recombination proteins [BR:
hazt03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108676081
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
RNA_ligase
BRCT_2
DNA_ligase_IV
BRCT
Motif
Other DBs
NCBI-GeneID:
108676081
NCBI-ProteinID:
XP_018019612
UniProt:
A0A8B7P0S3
LinkDB
All DBs
Position
Unknown
AA seq
785 aa
AA seq
DB search
MSVDEVSSKLKWSDMCGLLEKVRAAKTSATKKTLLQNFMSSYRQLLQTHRLNNPASTASF
VPALRVLVPALDKGRGAYGIRQARLASLYVGLLGLSKTSPDALKLANYRAPKTAGGSSGG
DFAEVAYYVLKNRCPAVGNLTLRDVDAHLSAIASHHAQGTQEEVTRVLTLLVRNMAALEQ
KWVIRVLLKEVSLGLSASTVLTCWHPDARDLYDVSNCLDKVCTTLRDPLIRLHEVQVSLF
AAFRPMLAERAVLRKIEKQMRRKTYVAEEKFDGERSQLHKRGDTYMYFSRNGFDYTSSFG
GSPHEGSLTPHVHGLLLPHVQEIILDGEVVCWHKQYGVVVPKGQNHDVKSLREDGPLQVC
FCAFDVLLLNGRVLTSLPLSERRQLLIGALRQQEGRLVVSKQQEVTNREEVVSVLNAAIL
ARQEGVVLKDPDGPYTPAARTAGWIKLKPDYVEALVPDLDLVVVGGKYGAGRRHGVLTSF
LLAAALSSAVTDVLSLTVSGAHLYQVGGAHLYQVSGAHLYQVSGAHLYQVGGWRPPLPGG
VVAPTSTRGVAPTSTRWVVPTSTRWGSGAHLYQGSGAHLYQVGGAHLYQVGGAHLYQVSA
VFAGQEICVLEGSSNPTRIANPSTKPTPEMSTLAQPPTDHPTTKQTLEVAIARAGGRLTQ
NPTPATLCVVCETLTVRATNLSTHHNVVKPSWVMRCLQEGRLLPWGPRDAVALLPEALEK
TRLTHDLFGDSYTDPIDEPLLRDILDNMRDVEVEEGEVQEMEQLLCGGQQRPLFHDVACI
VSLSS
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtagacgaggtgagcagcaagttgaagtggtctgacatgtgtggtctgctggag
aaggtgcgtgcagctaagacctccgccacgaagaagaccctcctgcagaacttcatgagc
tcctacagacagctgctgcagacacatcgtctgaacaaccctgcgtctactgccagcttc
gtgccagcactgcgtgtgctggtgccagcactggacaagggccggggggcgtacggtata
cgacaggccaggctggccagcctctacgtaggcctcctcggcctatccaagacctcccct
gacgccctcaaacttgctaattaccgcgcccctaagacggcggggggcagcagtgggggg
gacttcgcagaggtagcttactacgtgctcaagaaccgctgccctgcggtgggcaacctc
accctgcgggatgtggacgcccatctcagcgccatcgcctcccaccacgcccagggcacc
caagaggaggtgacgcgggtgctgacgctgctggtgcgcaacatggcggcgctcgagcag
aagtgggtcatccgcgtgttgctgaaggaggtgtcgctggggctgagcgccagcaccgtg
ctgacgtgctggcatcctgacgccagggacctctacgacgtcagcaactgccttgacaag
gtatgcacgaccctgcgtgaccccttgatacgcctccacgaggtgcaggtgtcgctgttc
gcagcgttccggccgatgcttgcggagcgcgcggtgctccggaaaattgagaagcaaatg
cggcgtaaaacttacgtcgctgaggagaagtttgatggcgagcgatcgcagctacacaag
cgtggcgacacttacatgtacttctccaggaacgggttcgactacactagcagtttcggg
ggctccccccacgaggggtccctcaccccccacgtgcacgggctgctgctgccgcacgtg
caggagatcatcctggacggggaggtggtctgctggcacaagcaatatggcgtcgtcgta
cctaaagggcagaaccacgacgttaagtcgctgcgcgaggacgggccactgcaggtctgc
ttctgcgcgttcgacgtcctgttgctgaacgggcgcgtgctaacgtccctgcccctcagt
gagcgacgtcagctgttgataggcgctctgcgtcaacaggaaggacgtctcgtagtgtcg
aaacaacaggaagtgaccaacagggaggaggtcgtgtcggtcctcaatgccgccatattg
gcccggcaggagggggtcgtactcaaggaccccgacggaccgtacacccccgccgcccgc
accgccggctggatcaagctcaagcccgactacgtggaggcgctggtaccagacctggac
ctggttgtggtgggcggcaagtacggcgctggcaggcgacacggcgtcctgaccagcttc
ctgctggcagccgctctctccagtgctgtcactgacgtgctgtcactgacggtgagtggc
gcccacctctaccaggtgggtggcgcccacctctaccaggtgagtggcgcccacctctac
caggtgagtggtgcccacctctaccaggtgggtgggtggcgcccacctctaccaggtggg
gtagtggcgcccacctctaccaggggagtggcgcccacctctaccaggtgggtggtgccc
acctctaccaggtggggtagtggcgcccacctctaccaggggagtggcgcccacctctac
caggtgggtggtgcccacctctaccaggtgggtggcgcccacctctaccaggtaagcgcc
gtatttgctggccaggagatctgcgtcctagaagggtcttccaaccctaccaggattgct
aacccctccacaaaaccgaccccggagatgtcaacccttgcacaacccccaacagaccac
ccgaccacgaagcagacccttgaggtggccatagcacgggctggaggtcgtctcacgcag
aacccgaccccggcgacactgtgcgtggtgtgtgaaacactcacggtgcgtgccacgaac
ttatccacgcaccacaacgtggtgaagccttcgtgggtgatgaggtgcctgcaggagggg
cggttgctgccatggggccctcgggacgccgtggccctcctgcctgaggccctcgagaag
acccgcctcacgcacgacctcttcggggactcctacaccgaccctatagacgaacccttg
ctcagggacatactggataacatgcgtgacgtggaggtggaggagggggaggtgcaggag
atggagcagctgctgtgtggggggcagcagcgccccctcttccatgacgtcgcctgcatc
gtgagtctgtcgtcataa
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