Halomonas binhaiensis: E4T21_08070
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Entry
E4T21_08070 CDS
T08791
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hbh
Halomonas binhaiensis
Pathway
hbh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E4T21_08070 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbh03400
]
E4T21_08070 (mfd)
Enzymes [BR:
hbh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E4T21_08070 (mfd)
DNA repair and recombination proteins [BR:
hbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E4T21_08070 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
AAA_22
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QEM81503
UniProt:
A0A5C1NFV4
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All DBs
Position
complement(1854058..1857507)
Genome browser
AA seq
1149 aa
AA seq
DB search
MPTFSPLEPPHPKGTRDTLYWLEPPGSATALALSRLANDAPLLVVTADTAEALRLENELA
FFSTVPVLPFPDWETLPYDSFSPHQDIVSARLRTLRTLQDGVHGIVLVPINTLMQRLSPV
DYIAGRVLTLEVGATLDREAFRDKLSRAGYRAVETVYEPGEYALRGALIDLFPMGNDSPL
RIDLFDDEIDSLRSFDPDTQRSADKVESIELLPAHEYSLSRSAIACFREGFETLFDVDPR
QCPLYVDALKGIPAAGLEQYLPLFFEETASLLDHLAEGTRIALMPRAREAAEHHWAAITS
RYENLGVDPTRPLLPPHRAFIPEAELFGLIKQHPRIELTRDAAHPHAAASLTEPPAEVAI
NARTKSPLAALQKYLTDNPERRVLFVAESRGRREALEETLAPATPHLPQIASFSAFLESE
HRLAIGEGDLASGLTLTTPDLAVITETELIGDVVRQTRRQGKATDDNELAVRHLSELREG
APVVHQLHGIGRYRGLEILETSGQAAEFVCLEYAEGSKLYVPVDSLHLISRYSGVDEELA
PLHRLGSEQWDKAKRKAAEKIRDTAAELLDIYARREAREGFANEPPDDEYARFVANFPFE
ETPDQRQAIQAVISDMTTPKPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTL
LARQHYENFRDRFADTAVDIELLSRFTGGSGQNDVLARIKDGKTDIIIGTHKVLSKQLRF
PRLGLVIIDEEHRFGVSQKEHLKGLRSEVDVLTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFIQQREEPTIKEAILREILRGGQVYFLHNEVKTIEAAAEKLRELVPEARVGV
AHGQLPERSLERVMSDFYHKRFNVLVCSTIIETGIDVPNANTIIIERADKFGLAQLHQLR
GRVGRSHHQAYAYLLAPPPRAMTRDAVKRLEAISQAEDLGAGFTLASHDMEIRGAGELLG
DEQSGQMEAIGYSLYMQMLDRAVQAIREGRTPNIEDPLDNGVEINLNLPALIPDDYLHDV
QQRLVMYKRIANTTNDAELKELRVEMIDRFGLLPGPVKTLLRQTRLRHRAERLGISRLEA
GEERGRILFSHRTNVDPLTLVELIQKSPQVYRLDGADILRFTTPMNNEEARFQAIEQLLD
ALNRKAEAA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgccgactttttcgccgctcgaacctccacaccccaagggcactcgcgacaccctctac
tggctggagcccccgggatctgccacagccctggccctgtcacgcctggccaacgatgcc
ccgctgctggttgttaccgccgataccgccgaggccctgcggctggaaaatgagcttgcc
ttcttctccacggtacccgtcctgcctttccctgactgggaaacgctgccttacgatagt
ttttcgccccatcaggatattgtatcggcgcgcctgcgcacgctacgcaccctgcaggat
ggcgtgcatggcatcgtgctggtgccgatcaataccctgatgcagcgactttctcccgtt
gactacatcgcgggacgcgtgctgaccttggaagtgggcgccacgctggaccgggaagcc
ttccgggacaaactgtctcgagcgggatatcgcgcagtggaaacggtttacgagcccgga
gaatatgccctgcgaggcgcactgatcgacctcttccccatgggcaatgactcgccactg
cgcattgatctgtttgacgatgaaatcgacagtttgcgcagtttcgaccctgacacccag
cgtagtgcagacaaggtggaaagtatcgagctgctaccagcccatgaatattcgctgtca
cgctctgccatcgcctgcttccgcgaaggattcgagacactcttcgacgtggacccgcgc
cagtgccccctgtatgtggatgcattgaagggcatccccgctgcaggcctggagcagtac
ctgccactgttcttcgaggaaaccgcctccctcctcgaccatctggccgaaggcacacgc
atcgcgctcatgccccgcgcccgggaagctgccgagcatcactgggcggctatcaccagt
cgctacgaaaacctcggcgtcgaccccactcgaccactgctgccacctcacagggccttc
attcccgaagccgaactgtttggcctgatcaagcaacaccctcgcatcgagctgacacgt
gatgccgcgcacccgcatgcagcagcctctctgacagaaccaccagccgaggtggccatc
aatgcccggacgaagtcacctctggctgccctgcagaaatacctgaccgacaatcccgaa
cgtcgtgttcttttcgttgccgagtcgcgtggtcgccgtgaagcgctcgaagaaactctg
gccccagcgacgccccatctaccgcagatagcaagcttctctgctttcctggagagcgag
catcgcctggccatcggtgaaggcgatctagcatcaggcctgaccctgactacacctgac
ctggccgtgatcaccgaaaccgagctgatcggtgacgtcgtacgccagacccgtcgccag
ggcaaggccacagatgacaacgagctggccgtacgccacctgtccgaactacgggaaggc
gcccccgtcgttcaccagctccacggaatcggtcgctatcgaggactggaaatcctggaa
accagcgggcaggcagccgaatttgtctgccttgaatatgccgaaggcagcaagctctat
gtccctgtggacagcctgcatctgatttcccgctattctggcgttgacgaagagctcgcc
cccttgcaccgtctcggctccgaacaatgggacaaggccaagcgcaaggctgccgaaaag
atccgcgacaccgccgcagagctgctggatatctatgctcgccgcgaagccagagaaggc
tttgccaacgaacctcctgatgatgaatatgcccgcttcgttgccaacttccccttcgag
gaaacgccagatcagcgccaggccattcaggcagtcatctcggacatgaccaccccaaaa
cccatggatcgcgtcgtgtgcggggacgtaggttttggcaagaccgaggttgccatgcgc
gcggcattcctggcggtacagtccgggcgccaggtggtggtactggttcccaccacacta
ctggctcgtcagcattacgagaacttccgtgaccgcttcgccgataccgcagtggacatc
gaattgctgtcgcgtttcaccggaggcagcggccagaacgatgttcttgctcgcatcaag
gacggcaagacagacatcattatcggcacccacaaggtgctgtcgaaacagctgcgcttc
cctcgcctgggactggtcatcattgatgaggaacatcgattcggcgtctcccagaaagag
cacctcaagggcttgcgctccgaagtcgatgtattgacgctcaccgccacccctattccc
agaacactgaacatggccatgagcggcatacgcgatctgtcgatcatcgccacacctcct
gcacgccgcctgtcggtaaaaaccttcattcaacagcgcgaagagcccaccatcaaggaa
gccatcctgcgcgaaatcctgcgtggcggtcaggtctacttcctgcataacgaggtcaag
acaatagaggcagctgcagaaaagctacgtgaactggtccccgaagccagggtcggtgtc
gcccatggccaattaccagaacgctccctggaaagagtgatgtcggacttctaccacaag
cgctttaacgtgctggtgtgttccaccatcattgaaaccggcatcgacgtacctaacgcc
aataccatcattattgaacgtgctgacaagttcggcctggcccaactccaccagctgcgt
ggacgagtcggtcgcagccaccaccaggcctatgcttatttgctggcaccccctcctcgc
gccatgacccgggatgccgtcaagcgccttgaagcaatcagccaggcagaagatctcggc
gcaggcttcacgctcgccagtcacgacatggaaatcagaggggctggagaactgttgggc
gacgagcaaagcggtcagatggaagccattggctacagcctttatatgcagatgctcgac
cgtgcagtgcaggcaatccgtgaaggtcgaactcccaatatcgaggaccctctggacaat
ggggtggaaatcaacctcaacctgcccgcactgatccctgatgattacctccatgatgtg
cagcaacgcctggtcatgtacaagcgcattgccaacacgaccaatgatgctgaattaaag
gaactgcgggtggaaatgatcgatcgttttggtctcctgccaggcccggtcaagacattg
ctgcgccagacacgactgcgtcatcgtgctgaacgcttgggcatcagccgcctggaagcc
ggagaggagcgtggccgcatcctgttcagtcacaggaccaatgtggacccattgaccctg
gtggaactgattcagaagtcccctcaggtctatcgcctggatggtgcagatatacttcgt
ttcaccactcccatgaacaatgaagaggctcgcttccaggctatcgagcaattgctcgat
gctctgaaccgaaaggcagaggccgcctga
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integrated database retrieval system
