Hymenobacter busanensis: GUY19_11330
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Entry
GUY19_11330 CDS
T07319
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hbn
Hymenobacter busanensis
Pathway
hbn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hbn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GUY19_11330 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbn03400
]
GUY19_11330 (mfd)
Enzymes [BR:
hbn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GUY19_11330 (mfd)
DNA repair and recombination proteins [BR:
hbn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GUY19_11330 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
QHJ07838
UniProt:
A0A7L4ZX74
LinkDB
All DBs
Position
2642484..2645990
Genome browser
AA seq
1168 aa
AA seq
DB search
MQASEFLRLYSLDTDIQTLALRLQPGNDEVPLRFHLRGLVGSQDAAVAAAIHLDRPDEHL
LFVLHDKDEATYFASDLQNLVGDREEVLTFPSSYKRAYSFDETENANVLMRAEVLNRLSG
KSGEKGKTADEKAKANAKKNEDAPPKGALIVTYPEALSEKVINRQSLVQNTFTCKVGDRL
DVNFLGELLAEYDFERTDFVYEAGQYAIRGGIVDVFSYANELPYRIELFGDEIESMRTFT
PDSQLSVEKKEQISIVPNVQTKLLTEKRESFLEFVPANTAVWVKDVRQLLDIVGEQFDKA
EQNFQTMLEEAHGVQIKSKPEDLFESTKALKKHLERFPVLEFGKRFYHKEAEQVQFTSKP
QPSFNKDFSRLVKNLHENQSRDLLNIIAADSMRQIDRLRTIFDELDHDVRFQHLGLGLRE
GFIDENRKVVVYTDHQLFERYYRAQEKRKFSKKKALTLKELRTLQPGDYVVHQDHGIARF
AGLTQVDINGHLQEAIRLVYRDDDVLTVSIHALHKIAKYSGAEGTPPSMSKLGSPEWENK
KKAVKKKVKDIAADLIRLYAKRKTAPGYAFAKDSFMQAELESSFIYEDTPDQAKATEDVK
NDMEQPHPMDRLVCGDVGFGKTEVAIRAAFKAVADGKQVAVLVPTTILAMQHFKTFRDRL
GELPVTVDYINRFKTTKQVKETLGKVAAGKTDILIGTHRLTNKDIQFKDLGLLVIDEEQK
FGVKTKDKLKELKVNVDTLTLTATPIPRTLHFSLMGARDLSVIATPPPNRQPVQTELAVF
DEHLVRDAIARELKRGGQVFYVHNRVKDLDEQAAMIQRLVPDARITSIHGQLEGEVLEKR
MMKFVEHEYDVLVSTNLIESGLDIPNANTIIINRAHMHGLSDLHQMRGRVGRSNKKAYCY
LLTPPVAGLPSDARKRLSTLEEFSDLGAGFNVAMRDLDIRGAGNLLGGEQSGFINDLGYE
TYHQILDEAVQELKETEFRDLFLGDTTGRLKDAADFARPRECNVETDLQILIPDTYVSSV
SERLQLYSKLDRAREPEELRRLLASMVDRFGPLPAEVEQLADIVRLRWQACRVGFSKISL
KRDTLKGYLDAGEGHEPYFQGEQFGQILNYVQTHPRRASMKERKEQLIITIADVRGVQYA
RQLMNELALESMPPVVATAAVSDDEDEG
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagcctccgaattccttcgcctctattcgctcgataccgatattcagaccctggcg
ctgcgcctgcagccgggcaacgacgaggtgccgctgcgcttccacctgcgcggcctcgtg
ggcagccaggacgctgccgtggccgctgccattcacctcgaccggcccgacgagcacctg
ctcttcgtgctccacgacaaggacgaggccacctacttcgcttccgacctgcaaaacctc
gtcggcgaccgggaggaggtcttgacgtttcccagctcctacaagcgcgcctattccttc
gacgagacggaaaacgccaacgtgctcatgcgcgccgaggtgctcaaccgcctcagcggc
aaatcgggcgaaaagggcaaaacggccgacgagaaggccaaagccaacgcgaaaaagaac
gaagacgcgccgcccaagggcgcccttatcgtgacctaccccgaggcgctgagcgaaaaa
gtcatcaaccgccagagcttggtgcagaacacctttacctgcaaggtgggcgaccggctc
gacgtgaatttcctgggcgagctgctggccgagtacgacttcgagcggacggattttgtg
tacgaggccggccagtacgccatccgcggcggcatcgtcgacgtgttcagctacgccaac
gagctgccctaccgcatcgagctgttcggcgacgaaatcgagagcatgcgcaccttcacg
cccgactcgcagctgtcggtggagaagaaggagcagatcagcatcgtgcccaacgtgcag
acgaagctgctgaccgagaagcgcgagtcgtttctggagtttgtgcctgccaacaccgcc
gtgtgggtgaaagacgtgcgccagctgctcgacatcgtgggcgagcagttcgacaaggcc
gagcagaacttccagaccatgctcgaagaagcccacggcgtgcagatcaagtccaagccc
gaggacctgttcgaatcgaccaaggccctgaaaaagcacctggaacgcttcccggtgctg
gagttcggcaagcgcttctaccacaaagaagccgagcaggtgcagttcaccagcaagccc
cagccgagcttcaacaaggacttttcgcgcctcgtcaagaacctacacgaaaaccagagc
cgcgacctgctcaacattattgccgccgactcgatgcggcagatcgaccgcctgcgcacc
attttcgacgagctcgaccacgacgtgcgctttcagcacctcggcctggggttgcgcgaa
ggtttcatcgacgaaaaccgcaaagtcgtcgtctacaccgaccaccagctgtttgagcgg
tactaccgcgcccaggagaagcgcaagttctccaagaaaaaggcccttaccctcaaggag
ctgcgcaccctgcaacccggcgactatgtggtacaccaggaccacggcattgcccgcttc
gccggcctcacccaggtcgatatcaacggccacttgcaggaggctatccgcctggtgtac
cgcgacgacgacgtgctgaccgtgtccatccacgccctgcacaaaattgccaagtactcg
ggcgccgagggcacgccaccgagcatgtccaaactcggctcacccgagtgggagaataag
aagaaggccgtcaagaaaaaggtcaaggacattgccgccgacctcatccgcctctacgcc
aagcgcaaaaccgcgcccggctacgccttcgccaaagactccttcatgcaggccgagctg
gagtcgtcgtttatctatgaagacacgcccgaccaggccaaggccaccgaggacgtgaaa
aacgacatggagcagccccaccccatggaccgcctcgtgtgcggcgacgtgggtttcggc
aagaccgaagtggccattcgggccgccttcaaggccgtggccgacggcaagcaggtggcc
gtgctggtgcccactaccatcctggccatgcagcacttcaaaaccttccgcgaccggctc
ggcgagctgcccgtcaccgtcgactacatcaaccgcttcaaaaccaccaagcaggtgaag
gagacgctaggcaaggtggccgccggcaaaaccgacatcctcatcggcacgcaccgactc
accaacaaggacattcagttcaaggacctcggcctgctggtgattgacgaagagcagaag
ttcggcgtcaaaaccaaggacaagctcaaggagctgaaggtgaacgtcgacacgctcacg
ctcacggccacgcccattccgcgcaccctgcacttttccctcatgggcgcccgcgacctg
tccgtcattgccacgcccccgcccaaccgccagcccgtgcaaaccgagctggccgtgttc
gacgagcacctggtgcgcgacgccattgcccgcgagctgaagcgcggcgggcaggtgttc
tacgtgcacaaccgcgtgaaagacctcgacgagcaggccgccatgatccagcgcctcgtg
cccgatgcccgcatcaccagcatccacgggcagctggaaggcgaagtgctcgaaaagcgc
atgatgaaattcgtggagcacgagtacgacgtgctcgtgtccaccaacctcatcgaatcg
ggcctcgacattcccaacgccaacaccatcatcatcaaccgcgcccacatgcacggcctc
tccgacctgcaccagatgcgcgggcgtgtgggccgctccaacaaaaaggcctactgctac
ctgctcaccccgcccgtggccggcctcccgagcgacgcccgcaagcgcctctccaccctc
gaagagttttcggacctcggcgcgggcttcaacgtggccatgcgcgacctggacatccgc
ggcgcgggcaacctactcggcggcgagcagtcgggcttcatcaacgacctgggctacgaa
acctaccaccagattctcgacgaagccgtgcaggagctcaaggaaaccgagttccgcgac
ttgttcctgggcgacaccaccggccgcctcaaagacgccgccgactttgcccgcccccgc
gagtgcaacgtcgaaaccgacctgcaaatcctcattcccgatacctacgtctcgtccgtc
tccgagcgcctgcagctctactccaaactcgaccgcgcccgggagcccgaggagctgcgc
cgcctgctggccagcatggtcgaccgcttcggcccgctgcccgccgaagtcgagcagctg
gccgacatcgtgcgcctgcgctggcaggcctgccgcgtgggcttcagcaaaatctccctc
aagcgcgacaccctcaaaggctacctcgacgccggcgaaggccacgagccctacttccag
ggcgagcagttcggccagatcctgaactacgtgcaaacccacccccgccgcgccagcatg
aaggagcgcaaggagcagctcatcatcaccatcgccgacgtgcgcggcgtgcagtacgcc
cgccagctcatgaacgagctggccctcgaatccatgccgcccgtggtagccacggctgcg
gtgtcggatgatgaggatgaggggtaa
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integrated database retrieval system
