Hevea brasiliensis (rubber tree): 110640066
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Entry
110640066 CDS
T05150
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
110640066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hbr03400
]
110640066
Enzymes [BR:
hbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110640066
DNA repair and recombination proteins [BR:
hbr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
110640066
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
110640066
NCBI-ProteinID:
XP_021646933
LinkDB
All DBs
Position
Unknown
AA seq
1190 aa
AA seq
DB search
MTDETKFSVMVSLFEWIQKTKYATKKRSKFRKFLDTFCKPDDYFSAIRLILPSLDRERGS
YGLKESVLATCLVDALAMSRESPDALRLFNWRKGGAKTGVNAGNFSLVAFEVLQSRQGMS
SGGLTIKELNDLLDSLALSENRAEKTSVLSTLIKKTNAQEMKWIIMIILKDLKLGISEKS
IFHEFHPDAEDLFNVTCDLKLVCEKLKDRSQRHKRQDIEVGKAVRPQLAMRVSDAHSAWK
KLHGKDVVLECKFDGDRIQIHKNGPEVHYFSRNFLDHSEYGHGMSDLIIQNVLVDRCILD
GEMLVWDSSLNRFAEFGSNQEIAKAAKDGLDSDRQLCYVAFDILYVGDTSVIHQSLRERH
DLLRKFVRPLKGRLEILVPDGGLNDHRLPGEPPCSLIAYNVNDVERFFEETVKNRDEGII
IKDLGSKWEPSDRSGKWLKMKPEYIQAASDLDVLIIGGYYGSGRHGGEVAQFLVGLAELP
APNTYPRRFISFCRVGTGLSDDELAAVVTKLKPYFRKYEYPKKGPPSFYHVTNNSKERPD
VWIESPEKSIILSITSDIRTISSEVFAAPYSLRFPRIDRVRYDKPWHECLDVQSFVELVH
SSNGTTQKGKESGVLQDSKQTRMKSSKRGGRKNASVVPSHFMETDVSDVKEETLIFSKMM
FYFINVPPTYSLEYLHKMVAENGGTFSMNLNKSVTHCVAAESKGIKYQAGKRHGDIIHCS
WVLDCCSQKKLLPLQPKHFLFLSDSSKKKLQEEIDEFSDSYYWEVDLADIKQLLDSINTS
EDANRIEYFKRKYCPKDKWSRFHGCSMYFYLSTLSLTPDWESIMGLKLRRWKLEVLMGGG
QVSNNLANATHMVVLTVPGSKVDFDTLIKSFTGVEKNLLMNKRLHVIGYQWLENSLETQK
KLQEDTYSLKPCGLQELNIEECQFDPDVEEGSWNFDGIGNQKLPSIPDSKTKGDGKTSFR
CPRISVSSKGDAKRKRGRPVGKSVKRGTGVSQARRTRPRIGKPAKLCEIGLDEGGSFDDD
TNEEGNKMSGKTHEIHAEVSEEIPGMKQAGKADSKSSHMHEIAEKEVVEDDRQEEWIAKP
SDVKIDERQASDVKIDERHDGRDKRPNEAPDILTGGRHYEQEKENTEKLEVMVDPVHAML
IDMIPSLGMKSAETTNPILDREKPPVDPTAQPAKKKKVSYKDIIGEMFKD
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgacggatgaaaccaagttcagtgtgatggtgagtctcttcgagtggattcagaagacc
aaatacgccaccaagaaacgctcaaagtttcgcaagtttctcgacactttctgcaagcct
gacgactacttctccgcgattcgattgatacttccgagtcttgaccgagagaggggctct
tatggactcaaggagtcggtgctcgccacctgcctcgtcgacgcactcgccatgtccagg
gagtcccccgacgctcttcgcctctttaattggcgtaaaggaggcgccaagaccggcgtt
aatgccggcaatttctctctcgtcgccttcgaggtcctccaatctaggcaaggaatgtca
tcaggtgggctaacaataaaggaactgaatgacttgcttgatagcttggctttgagtgaa
aacagagcagagaaaacttcagttctttccacactgattaagaagacaaatgctcaggaa
atgaagtggattataatgataattctcaaagatttgaaattgggaattagtgaaaaaagc
atttttcatgaatttcatcctgatgcggaagacttgttcaatgttacgtgtgacttaaaa
ttggtctgtgaaaagttgaaggatcgaagtcaaaggcacaaacgccaggatattgaggtt
gggaaagctgtgcgcccacaactagctatgagagttagtgatgcacattctgcatggaaa
aagcttcatgggaaggacgtggttttggaatgtaaatttgatggtgaccgcatccaaata
cataagaatgggccagaggtacactacttttcaaggaacttccttgatcactctgaatat
ggacatggaatgtcagaccttattattcaaaatgttttggtagataggtgtatacttgat
ggtgaaatgttggtttgggattcttctttgaatcgatttgctgagtttggttcaaatcag
gaaatagcaaaggcagcaaaagatggacttgacagtgatagacagttgtgctatgttgct
tttgatatcctttatgttggggataccagtgttattcaccaaagcttaagggaaagacat
gatctgctccgaaaatttgtgaggcctttgaagggtcgtttagagattcttgtacctgat
gggggtctcaatgatcatcgtcttcctggggaaccaccttgttcgctcattgcttataat
gtgaatgatgttgagagatttttcgaggaaactgttaaaaacagagatgaagggatcata
attaaagaccttggatcgaaatgggaaccgagtgatcgaagtggaaagtggttgaaaatg
aagcccgagtacatacaggctgcctctgacttggatgttcttatcataggagggtactat
ggctctggacgtcatggaggagaggtggctcaattcttggttggccttgctgagcttcct
gccccaaatacatacccaaggcgattcatctccttttgtagagtgggcactggactatca
gatgatgagctagctgctgttgtaactaaattgaagccttattttaggaaatatgaatac
ccaaagaaaggaccaccaagtttttaccatgttacaaataattcaaaagagagaccagat
gtgtggattgagagccctgagaaatcaatcatattatctattaccagtgatattcggact
ataagttctgaggtatttgctgcaccatatagcctgagatttccacgtattgacagagtt
agatatgacaaaccctggcatgaatgtcttgatgtgcagtcatttgtagaactagtgcat
tcaagtaatggtaccactcaaaaggggaaagaatctggagtcttgcaagacagcaaacaa
acaagaatgaaatcctctaaaaggggtggaagaaagaatgcatctgttgttccatctcat
tttatggagacggatgtctctgatgtgaaggaggagaccttaatattttcaaaaatgatg
ttctactttattaatgtgcctcctacctattctctcgagtacttgcacaaaatggttgct
gagaatgggggaactttctcaatgaatttaaataaatcagttactcactgtgtagcagct
gaaagcaaggggattaaatatcaggcaggaaaacgtcatggagatattattcattgctct
tgggtattggattgttgttcacaaaagaagctccttcctttacagccaaagcacttcctc
ttcctttctgactcttcaaagaagaagttacaggaagaaattgatgaattttctgattct
tactactgggaggtagatcttgcagatatcaaacagcttctagacagcataaatacttca
gaagatgccaacagaattgaatattttaagagaaagtactgtccaaaggataaatggtct
cgctttcatggctgctctatgtacttctacctttcaacactgtctctaacacctgattgg
gaatccattatgggacttaaactgaggagatggaagcttgaagttcttatgggtggtggc
caagtcagcaataatcttgctaatgctacccatatggtggtcctgactgttccaggatcc
aaagtggattttgatactcttataaagagttttacaggtgtggagaaaaatctactcatg
aacaagaggttgcatgtgatcggatatcaatggttggagaactccttggagactcagaaa
aaattgcaagaggacacatatagcttgaagccctgtggattgcaagagttgaatattgaa
gagtgccaatttgatccagatgtggaagaaggctcttggaattttgatggcataggaaac
cagaaacttccatcgattccagacagcaaaacaaaaggagacggcaaaacttcttttaga
tgtcctaggatatcagtctcatccaagggggatgccaaaaggaaaagagggagacctgtt
ggcaagagtgtgaagagaggaacaggcgttagccaagctcgaagaacacgacctcgcatc
ggaaagcctgctaaactatgtgaaattggattggatgaaggtggttcatttgatgatgat
acaaatgaagaagggaacaaaatgagtgggaaaacccatgaaatccatgctgaagttagc
gaggaaattccaggaatgaaacaagctggaaaagcagattcaaaatcatcacacatgcat
gagatagctgaaaaagaggttgttgaagatgatagacaggaagaatggattgctaaacct
tctgatgttaaaattgatgaaaggcaagcttctgatgttaaaattgatgaaaggcatgat
ggaagagacaaacggcctaatgaagctcctgatatcctaaccggtggaaggcattatgaa
caggagaaagaaaacacagagaaactagaagttatggttgatcctgttcatgccatgtta
attgacatgattcctagccttggaatgaagagtgcggaaactacgaacccgattctggat
cgtgaaaagccccctgtcgatcctactgcacagcctgcaaagaaaaagaaagtcagctac
aaggatattattggtgaaatgttcaaggattga
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integrated database retrieval system
