Hevea brasiliensis (rubber tree): 110644938
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Entry
110644938 CDS
T05150
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110644938
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hbr03021
]
110644938
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110644938
Transcription machinery [BR:
hbr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110644938
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110644938
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
110644938
NCBI-ProteinID:
XP_021653609
LinkDB
All DBs
Position
Unknown
AA seq
706 aa
AA seq
DB search
MEDTDGGLSFDFEGGLDSGLTNPTASMSAIPSDNSAVSAAAANNNSAVAAVSATDPSAPG
ANLPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCVYKH
TNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLNSYNYGSSNKFFQQ
RGAGFQQHTDKSQFSQVPNNVGQGVAGKPSVTESTNAQQLQQQQQQQQQQQGQQSQQQAP
QAQTKNIPNGQPVQANRIATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNEAKLN
EAFDSAENVILIFSVNRTRHFQGCAKMTSKIGASIVGGNWKYAHGTAHYGRNFSVKWLKL
CELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMAISVAAEAK
REEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESEEEEEGFGQALGAAGQGRGRGRGIMW
PQMPLARGARPIPGMRGFPPMMMGADGFSYGQVAPDGFGMPDLFGVAPRGFTPFGPRFSG
DFTGPASGVIFPGRPSQPGAVFPTGRFGVMMGPGRAPFVGAMGPASTNPLRGNRPSSIPF
PPLSTPSTQNSNRPVKRDQRTAANDRNDRYTTGSDQGRVSVGGPDDEGQYQQEGIKASHD
NQFGAGNSFRNDESESEDEAPRRSRHGEGKKKRRGSEGDATPGSDH
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggaggacacagacggtggtctcagcttcgacttcgaggggggccttgactctggcctc
accaaccctaccgcctccatgtccgccatcccctctgacaattccgccgtgtctgctgcc
gccgctaacaacaactctgccgtcgccgctgtatctgctacggatccatcggcacctggc
gccaaccttcctgggcggcggagcttccggcagaccgtctgtcggcattggctccgcagc
ctttgcatgaagggcgacgcctgcggctttctacaccaatacgacaagtcgcgaatgcct
gtttgccgcttttttaggctttacggagagtgccgggagcaggactgcgtgtacaagcac
accaatgaggatattaaggagtgcaatatgtacaagttagggttttgtccaaatggtcct
gactgtcggtataggcatgcaaaattgcctggacctccaccacctgtggaagaagtcctt
cagaagatccagcaattaaattcttacaattatggatcctcaaacaaattttttcaacaa
aggggtgctggttttcagcaacacacagataaatctcagttttcgcaagttcccaacaat
gtgggtcaaggtgtagctggaaaaccctcagttacagagtctactaatgcacagcagctt
cagcagcagcagcagcaacaacaacaacaacaaggacaacagtctcaacagcaagcccct
caggcccaaacaaaaaatattccaaatggtcagcctgttcaggcaaacagaatagcaaca
cctttgcctcaaggaatatctaggtattttattgttaaaagttgcaaccgtgaaaatttg
gaattgtctgtacaacaaggagtttgggcaactcaaaggagcaatgaagctaaactaaat
gaagcttttgactccgctgaaaatgtgattttaattttctcagtcaatcggactcgacat
ttccagggatgtgcaaagatgacatccaaaattggtgcttccattgttggggggaattgg
aaatatgcacatggaactgcacactatggacggaatttctcagtcaaatggttgaagtta
tgtgaattatcattccacaaaactcgccacttgaggaacccatacaatgagaacctacct
gtgaagatcagtagagattgtcaggagctagagccctcaattggcgagcagttagcttcc
ttactttatcttgagcctgacagtgaactcatggcaatctcagttgcagcagaagcaaaa
cgagaagaggaaaaagcaaagggagttaatccagacaatggaggagagaacccagacatt
gttccgtttgaggacaatgaagaagaggaagaggaagaaagtgaggaggaggaggagggc
tttggtcaggctcttggagcagcaggtcaagggcgagggagaggcaggggaatcatgtgg
cctcagatgccactggcccgtggtgctagacccatccctgggatgcgaggttttccccct
atgatgatgggtgctgatggcttttcttatggacaagtggcacctgatggttttggaatg
cctgatctttttggcgttgcaccccgtggatttaccccgtttggtccaaggttttctggt
gattttacaggtcctgcatctggcgtgatatttcctgggagaccttcccaacctggggct
gtgtttccaactggtagatttggcgtgatgatgggtccaggacgtgctccttttgtgggg
gcaatgggcccagcttctacaaatccacttcgaggtaatcgaccaagcagtataccattt
ccaccactctctaccccatccactcaaaacagcaacagaccagttaagagagatcagagg
acagcggctaatgataggaatgacagatacactacaggatcagaccaaggcagggtttca
gttggtggaccagatgatgagggacaataccagcaagagggaataaaggcttctcatgat
aatcaatttggtgcaggaaacagctttagaaatgatgaaagtgaaagtgaggatgaggca
ccgaggcgatcaaggcatggggaagggaaaaagaagcgacgaggctcagagggagatgca
actccaggctctgatcactaa
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