Hevea brasiliensis (rubber tree): 110655022
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Entry
110655022 CDS
T05150
Name
(RefSeq) uncharacterized protein LOC110655022 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110655022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hbr03000
]
110655022
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110655022
04121 Ubiquitin system [BR:
hbr04121
]
110655022
Enzymes [BR:
hbr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110655022
Transcription factors [BR:
hbr03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110655022
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110655022
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110655022
Ubiquitin system [BR:
hbr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110655022
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
PcfJ
zf-UDP
MNR
Rtf2
FYVE
Motif
Other DBs
NCBI-GeneID:
110655022
NCBI-ProteinID:
XP_021666873
LinkDB
All DBs
Position
Unknown
AA seq
944 aa
AA seq
DB search
MSDKGDKLCPLCTEEMDLTDQQLKPCKCGYEICVWCWNHIMELAQKDNTEGRCPACRTSY
DKERIVEMAANCERLVAEINSERKLKSQKAKPKVSDGRMHLSNVRVIQRNLVYIIGLPLN
LADEAVLQQREYFGQYGKVLKVSISKTATGVIQHSSNNSCCVYITYSKEEEAVRCIQSVH
SFVLEGRTLRACFGTTKYCHAWLKNMPCSIPDCLYLHEFGTQEDSFTKDDLVSAFTRSKV
QQIIGATNNMHRRSGNVLPPPADEYTDRNITSTAKLNSKSSFCQNIGNFDSGSCADSGTE
TSNAFPGAASWVMCVSSGVPLVTNLSGSDSDGTLSHKPETSSGTQVFAPEVVSTKIPSDA
KRTMIPEESCELHPILVTSSNIAIPPAGASSLGAAKPSCTLHEDENFHEHGDFQGLCSAL
SSIRIDSHLKNENSNPVISESLIYNHNLHTSEGSQQDVNLLMKSSALPALRENSIVKDLL
GDQQLEGSRDIHNLPSMFCLLSSEQNFKEPNHHSWKQGEISHQSSFDAYPSTVPIKCEAD
AFPLRPAQPVLTSGFFDNQPSSGLQMDGTSNYSNVLTDKGLGKYLEGCDDTEGSANNEVA
PDRGENNIISSILSMDFDAWENTLTSPQSLVKLLAETDGQYSSLRIPSLRKIQDSNQSRF
SFARQDDFFNQESNLRHSVPDAINCSTLRHSYENKDFCMDRRYDISSNGSSEDSNSFLRG
HPFSASKFSFAKAPMSTPPGFSLPSRAVPPGFPTNGAVNYDANHLLQNSAPLSRNAGISI
DVEFMDPAIMEAGNGIQALWLNDPGFDMRPPLSPPLGTFNHDTELPMVMQQPISVKQNPW
FLDHFRNRFSPPDDAYNISSMLLGQSPPNNPSPFAQLTAQQVGNLHVSHGCWGGWDEIKS
VGNLGMSELLMNGKLGFNKVIQSHEDLKYQMSGSSNLYNGGFAL
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaagggagacaagttatgcccattgtgtactgaggagatggatttgacagat
cagcaattgaaaccatgcaaatgtggttatgagatttgtgtttggtgctggaatcacatc
atggaattggctcaaaaggataatactgagggtcgttgtccggcatgccgcacatcctat
gacaaggagagaattgtggagatggcggcaaactgtgaaagactggtggctgaaataaat
tctgagcgaaaactaaaatcacagaaggcgaagccaaaagtatctgatggaaggatgcat
cttagcaatgtcagagttattcaacggaatctagtgtacataattggattaccactcaac
cttgcagatgaagctgttcttcagcaaagagagtactttggccaatatggaaaggttctg
aaggtgtctatttctaaaacagcaactggggttattcaacattcttcaaacaacagttgt
tgtgtgtatataacatattcaaaagaggaggaagctgttcgatgtattcagtcagtacac
agttttgtcttagaaggtagaaccttaagggcatgttttggaaccaccaagtactgccat
gcatggcttaaaaacatgccttgcagcattccagattgtttgtatttgcatgaatttggc
actcaggaagatagttttacgaaagatgatttagtttctgcatttacaaggagtaaagtt
caacaaattatcggcgctacaaataatatgcatcgtcgttctggaaatgttttaccaccc
ccagcagatgagtataccgatagaaacataacatcaacagccaaactcaactccaaaagt
tctttttgtcagaatattggaaactttgatagtggatcttgtgctgatagtggtactgaa
acatctaatgcatttcctggggcggcctcatgggtcatgtgtgtctcttctggtgtacca
ttagttacaaatttgtcaggttcagattcagatggaactctgagtcataagcctgaaaca
tcaagtggaacacaagtttttgcacctgaagttgtgagcaccaaaatacccagtgatgct
aaaagaacaatgatacctgaagaaagttgtgaactgcatcctatccttgtgacatctagc
aatattgctataccacctgctggtgcaagctctttaggagcagccaaaccatcatgtact
ctgcatgaagatgaaaattttcatgaacatggagactttcagggattatgctctgcatta
tcgtcaattagaattgatagccatcttaagaatgagaactctaatcctgtcatttcagaa
agtttaatttataatcataacctgcacacaagtgaaggctcacaacaagatgtgaaccta
cttatgaaatcttctgccttaccagcactaagggaaaactcaattgtcaaggatttatta
ggtgatcagcagcttgaaggttctagagacatccataatctaccatccatgttttgtcta
ctttcttcagaacagaattttaaagagccaaatcatcattcttggaagcagggtgagatt
agtcatcagagttcttttgatgcctatccaagcactgtacccattaaatgtgaagctgat
gcctttccattgcgacctgcccagccagtgctaaccagtggattctttgacaaccaacct
agtagtggcctgcaaatggatgggacttctaattattctaatgtcttgactgacaaggga
ttagggaagtacttggaaggatgtgatgatactgaaggtagtgctaacaatgaagttgct
ccagatagaggggaaaacaacattatctcaagtattctatctatggattttgatgcatgg
gaaaatacattgacatcacctcagagtttagttaagttgctggctgaaactgatggacag
tatagttccctgagaataccaagtttaagaaaaatacaagatagcaatcagtcaaggttc
tcatttgccagacaggatgatttctttaaccaagagtctaatttgaggcattcagttcct
gatgctatcaattgttctactttacgtcattcttatgagaacaaagacttttgcatggac
agacgttatgatatttcttcaaatggtagttctgaggattccaatagttttctcaggggc
catcctttttcggcttctaaattttcttttgctaaagctccaatgtctacaccgccagga
ttttcacttccaagcagagcagtaccaccagggtttcctactaatggggcagtgaactat
gatgcaaaccatttgctacaaaattctgcaccattatctaggaatgctggcatctccatt
gatgttgaattcatggatcctgcaataatggaagctggtaacgggatacaggcattgtgg
ctgaatgatccaggctttgacatgaggccacctttatcaccacctctaggtacttttaat
catgatactgagcttccgatggtgatgcagcaacctatatctgttaaacagaacccttgg
ttcctggatcacttcaggaatagattctctcccccagatgatgcttacaatatttcatca
atgcttctggggcaatccccacccaacaatccatctccatttgcacaattgacagctcaa
caggttgggaatttgcacgtgtcccatggctgttggggtggttgggacgaaatcaagagt
gttggtaatctaggtatgtctgaattgttaatgaatggaaagctgggattcaacaaagtt
attcagagtcatgaggatttgaagtatcagatgtctggttctagcaatctatacaacgga
ggatttgcattgtaa
DBGET
integrated database retrieval system
