Hevea brasiliensis (rubber tree): 110667185
Help
Entry
110667185 CDS
T05150
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hbr
Hevea brasiliensis (rubber tree)
Pathway
hbr03013
Nucleocytoplasmic transport
hbr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hbr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110667185
03015 mRNA surveillance pathway
110667185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hbr03019
]
110667185
Enzymes [BR:
hbr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110667185
5.6.2.5 RNA 5'-3' helicase
110667185
Messenger RNA biogenesis [BR:
hbr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110667185
mRNA cycle factors
Common to processing body (P body) and stress granule
110667185
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
Helicase_RecD
nSTAND3
ATPase
AAA_16
PhoH
SRP54
AAA_22
AAA_32
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
110667185
NCBI-ProteinID:
XP_021683654
LinkDB
All DBs
Position
Unknown
AA seq
1270 aa
AA seq
DB search
MDSEQSNLYETASQPDTGTDAYTFLEFNTQGESDFDYPEFRSPVAWPTPSDSLAATSSSA
VDPTTSDHRTAASSSDHHSDSPAASPVSSKAARSGVGSNSQGVDGIVAGMGGLNFEETVD
EDGYEFGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKH
KEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLNVNALKDMNWD
LSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDATLEDLEKPGV
DDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVAIRWDIGLNKKRIAYF
VFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVN
HGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVENQNVRNTLPRRFGAP
GLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA
VDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKDEQ
GELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEP
ECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRM
HPSLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSY
LNRTEAANVEKIVTTFLRSGVVPCQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVA
SVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPL
WNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLFFGGGPGSISNDNFGSVAS
SSPNADKRSYRGRGSYMPPGPPNGNHKPGVHPTGFPMPRVPIPQFPGGPPSQPYAIPTRG
AVHGPVGAVPHVPPPGSRGFGAGRGNAGAPIGSHLPHQQSTQQTIGNMGSTFNFPALENP
NSQPSVGGPLSQPGYVNNMPVQGPSQTFRDGFSMGGMSQDFLGDDFKSQGSHVPYNVADF
STQASQSGYAVDYVTQGAQGGFPGNFMNQNSQAGFSRFGSGNDFMSQQDYMTHGSQGLFT
QIGFNDPPQDDASQSHFGIANPNPLQSQGLMNSLYSQPFAHYNTQPPNLQSQQQPQQGQA
SQNQKIHYNG
NT seq
3813 nt
NT seq
+upstream
nt +downstream
nt
atggattcagagcagagtaacctctatgaaacggcgtcgcagcccgacaccgggactgac
gcctacactttcttggaattcaatacccaaggcgaatctgacttcgactatcctgaattc
cgctctccggtggcctggccgaccccttcggattcccttgccgccacttcctcctccgct
gtggaccctaccacttctgaccaccgtactgctgcttcttcctccgatcatcactctgat
tcccctgcggcctctcctgtgtcatcgaaagcagcgcgcagtggggttggaagcaacagt
cagggggtcgatgggatagtggctggtatgggagggttgaatttcgaggagacggtggat
gaggatggatatgaattcggaaaaggtgattttacggaacatgcgtgtaggtactgtggg
gtttcaaatccggcttgtgtggtgaggtgtaatgttccatcgtgtaggaagtggttttgt
aattctagagggaacacttcgggttcgcatattgtcaatcacctggttcgtgcaaaacat
aaggaagtttgtctccataaagacagtcctctgggggaaacgatacttgaatgctacaac
tgtggatgtcgaaatgtattccttcttggatttatatcggccaagacagaaagtgttgtt
gttctcctgtgtagggaaccttgcttgaatgtcaatgcattgaaggacatgaattgggat
ctgagtcagtggtgtccccttattgatgataggtgctttctacagtggctagtcaagatc
ccttctgagcaggagcagttgagggcacgccaaataagtgctcagcaaataaataaagta
gaagaactttggaaaacaaatcctgatgctacccttgaagatcttgagaagccgggtgtt
gatgatgagcctcagcctgtagcattgaagtatgaagatgcatatcagtatcaaaatgta
tttgctccgctaattaagctcgaggcagattatgataagatgatgaaagagtctcaaagc
aaggacaatgtcgcaattcgatgggatattggtcttaacaagaagcgaattgcatatttt
gtttttccaaaggaggacaatgagctgcgtcttgtccctggtgatgaattgcgattgcgt
tattctggagatgctgctcatccagcttggcagtcagttgggcatgtgatcaagttaact
gcacaggaggaagtagcacttgagcttcgtgctagtcagggggttcctgttgatgtgaac
catggctttagtgttgattttgtgtggaagagcacaagttttgatcggatgcaaggggca
atgaaaacttttgcagtggacgaaacaagtgttagtgggtacatataccaccatttgttg
ggccatgaggttgagaatcaaaatgttcgtaatacacttccacgtcgttttggtgcacct
ggtcttccagagctcaatgcatctcaagtttttgctgtaaaaagtgttcttcaaagacct
ataagcttgattcaaggtccacctggcactggaaaaactgtcacttcagctgccattgtt
tatcacatggccaaacagggtcagggacaggttttggtatgtgccccaagtaatgtagct
gtagaccaactagctgagaagataagtgccactggcttgaaggttgttcgcctttgtgct
aaatcaagggaagctgtaagttcccctgttgagcatttgaccctccactatcaggttaga
catcttgacacttctgaaaagagtgaacttcacaagttacaacaattgaaagatgaacaa
ggagaactatccagcagtgatgaaaaaaaatacaaagcactaaagcgagcaacagagagg
gagatttctcaaagtgctgatgtcatttgttgcacgtgtgttggtgctggagatcctcga
ctggcaaattttaggtttcgccaggtgctgattgatgagtctactcaggcaacagaacct
gaatgtcttattcctttagttcttggggcaaagcaggttgtcctggttggtgatcattgc
cagcttggtccagtcattatgtgcaagaaagcagctcgtgctgggctagctcagtctctt
tttgaacgtcttgttttacttggtgtgaaacctattagattgcaggttcaataccgcatg
catccctctctctcagaatttccatctaacagcttttatgaaggtacacttcaaaatgga
gtgaccgtgaatgagaggcaatcatcaggaattgattttccctggcctgtgcctaatcgt
cccatgttcttctatgtccagatgggacaagaagaaataagtgccagtggaacatcctat
ctaaaccgtactgaggcagcaaatgttgaaaaaattgtaactactttcttgaggagtggt
gtggtcccttgtcagattggggtaataacaccttatgaagggcagcgagcatatattgtg
aactatatgtcaagaaatggtgctctcagacagcaactttacaaagaaattgaggtagca
agtgttgattcttttcaaggtcgggaaaaagattacattattttgtcttgtgttagaagt
aatgaacatcagggtattggatttcttaatgatcctcggcggcttaatgttgctctaaca
cgtgctagatatgggattgtcatccttgggaatcctaaagttctgagcaaacagcctctg
tggaatagcttattgacacattacaaggaacatgagtgcttggttgaaggacctctaaat
aacttgaagcagagtatggttcaatttcagaagcccaagaagatctataatgataggagg
ctcttctttggtggaggtcctggaagtatatctaatgacaattttggttctgttgcctca
tctagcccaaatgctgataaaagaagctaccgaggcaggggttcgtatatgccacctggg
ccacctaatggtaaccataaacctggtgtgcatcctactgggttcccaatgcctagggtt
cccattcctcaatttcctggtggtccaccttctcagccatatgctattccaactcgtggt
gctgtgcacgggcctgttggtgctgttcctcatgtccctccaccaggaagtcgaggtttt
ggggctggacgaggcaatgctggtgctcctattggcagtcatcttccacaccagcaaagc
acacagcagacaattggaaatatgggatctacatttaactttcctgccctggagaatcca
aatagccagccatctgtgggtggtccgctatctcagcctggatatgttaataatatgcca
gtgcaagggccgagtcaaacatttcgtgatggattttctatggggggcatgtctcaggac
tttttgggtgatgacttcaaaagccagggatcacatgttccatataatgttgctgacttt
tccactcaggcatcacaaagtggatatgctgttgattatgtgacccagggagcacagggt
gggttcccaggcaactttatgaatcagaattctcaagctggattttctcgttttggttct
ggaaatgatttcatgtctcagcaggactacatgactcatggttcacagggactgttcact
cagattggcttcaatgatccccctcaagatgatgcatcacagagtcacttcggcatagcc
aatccaaatccacttcagtcccagggcttgatgaattctctctactcgcaaccctttgct
cattacaacacacagccaccaaacttgcaatctcaacagcagcctcaacagggtcaagcc
tcccaaaaccagaaaatacactacaatggttga
DBGET
integrated database retrieval system
