KEGG   Billgrantia campisalis: I4484_04370
Entry
I4484_04370       CDS       T07024                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hcam  Billgrantia campisalis
Pathway
hcam03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hcam00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    I4484_04370 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hcam03400]
    I4484_04370 (ligD)
Enzymes [BR:hcam01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     I4484_04370 (ligD)
DNA repair and recombination proteins [BR:hcam03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     I4484_04370 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QPP50360
UniProt: A0A7T2DBW9
LinkDB
Position
complement(927007..929559)
AA seq 850 aa
MERLEEYRRKRDFTRTREPAGEARSEAAAGNLYVMHKHAASHDHFDLRLEQEGVLRSWAL
PKGPSLEPGEKRLAVEVEDHPLEYGEFEGVIPQKAYGGGTVMLWDRGTWQLKGKPKPDRI
DIELDGERLKGSWTLTRMSGKRQDKHGRNWLMIKRHDDKARMEDSLTVELDASVASGRSM
REIAEDRDNTWGSADDAGEATLAPPDPSGLDGARRAKLPREVKPQLATLAREVPAQGEWI
HEIKLDGYRLLARIDQGEVRLITRNGKDWTHRFPEIARVLEPLPVDSALLDGEVVAMGKD
GVSRFGDLQEALSSGRTAALAYQVFDLPYLSGYDLAGVPLLERKRTLAALLDAADMENGT
IRYSDHLETHGRAFHERACQMGLEGIICKRADSRYQQKRSRNWLKVKCVSHEEFVVGGYT
DPGGSRSGFGSLLMGAYGRQGLVYAGRVGTGFNNRLLERLSATLQALEVKRSPFHGSVPD
GRSVHWVRPELVIEVEFTERTRDGRLRHPAFRGLREDRNPEEIRMTPTKEMAAQGTPEEH
DSPGKPATRKRRDETSLLGVRLTHPERVLFPEQGLTKLDLARFYEQIHEWVLPHLARRPL
SLVRCPQGRNDECFFQKHPRRAIPASVPRIDVPEKQGSAEYVYVETAADLIGLVQAGALE
IHPWGSRIDHLEQPDGLVFDLDPDEGIAWKEILRVAGTLRERLESLGLTPFLRTTGGKGL
HLVVPLEPSAEWEQAKAFAKGVAEAHAKDDPKRLTTNMSKAKREGRIFIDYLRNGRGATA
VASYTVRARRNAPVAVPIRWDELNAALRADRYNVGNLRRRLSALGEDPWAGFDEAARPLD
TQLLKAVGVK
NT seq 2553 nt   +upstreamnt  +downstreamnt
atggaacgactcgaggagtaccgccgcaagcgcgacttcacgcggacgcgcgagcccgcc
ggcgaggcgcgaagcgaagccgccgcgggcaatctctacgtgatgcacaagcatgcggcg
agccacgaccacttcgacctgcgcctggagcaggagggcgtgctcaggagctgggccctg
cccaaggggccgagcctcgagcccggcgagaagcgcctggccgtcgaggtggaggaccac
ccgctggagtatggcgagttcgagggggtcatcccccagaaggcctacggcggcggcacc
gttatgctatgggaccgcggcacctggcagctcaagggcaagcccaagccggatcgaatc
gacatcgaactggacggtgagcggctcaagggcagttggacgctgacccgcatgagcggc
aagcgccaggacaagcacgggcgcaactggctgatgatcaagcgccacgacgacaaggcg
cgcatggaggattcgctcacggtggaacttgacgcgagcgtcgccagcgggcgcagcatg
cgcgagatcgccgaggatcgcgataacacctggggctcggccgacgatgcgggtgaggcc
acgcttgccccacccgaccccagcggcctcgacggtgcccggcgggcgaagctgccgcgc
gaggtgaaaccgcagcttgccaccctggcccgcgaggtgccggctcagggcgagtggatc
cacgagatcaagctcgacggctatcgtctgctcgcgcgtatcgaccagggcgaggtgcgc
ctgatcacccgcaacggcaaggactggacccaccgcttccccgagatcgcccgggtgcta
gagccgctgccggtggattcggcgctgctcgacggcgaggtggtggccatgggcaaggac
ggggtcagccgcttcggcgacctgcaggaggcgctgtccagcggccgcaccgctgccctg
gcctatcaggtgttcgacctgccctatctgtcaggctacgacctggccggcgtgccgctg
ctcgagcgcaagcgcaccctggcggcactgctcgacgccgccgacatggaaaacggcacg
attcgctactccgaccatctcgagacccacggcagggccttccacgaacgcgcctgtcag
atgggtctcgagggcatcatctgcaagcgcgccgacagccgctaccagcagaagcgcagc
cgcaactggttgaaggtcaagtgcgtcagccacgaggagttcgtcgtcggcggctatacc
gaccccggcggctcgcgtagcggcttcggctcgctgctgatgggcgcctacggcaggcag
ggactggtctacgccggccgcgtcggcaccggcttcaacaaccgcctgctggagcggctg
agcgccaccctgcaggcactcgaggtgaagcgttcgcccttccacggcagcgtgccggac
ggtcgctcggtgcactgggtacgccccgaactggtgatcgaggtggagttcaccgaacgc
acccgcgacggccgcctgcgccacccggcctttcgcggcctgcgcgaggatcgcaacccg
gaggagatccgcatgaccccgaccaaggagatggccgcccaaggcacgccggaagagcac
gacagcccgggcaagccagccacccgcaagcgcagggacgagacctcactgctcggcgta
cgcctcacccaccccgagcgggtgctgtttcccgagcagggcctgaccaagctcgacctg
gcgcgtttctacgagcagatccacgagtgggtgctgccccacctggcccgtcggccgctg
tcattggtgcgctgcccccaagggcgcaacgacgaatgcttcttccagaagcacccgcgc
cgcgccattcccgccagcgtgccgcgtatcgacgtgcccgaaaagcagggcagcgccgag
tacgtctacgtcgaaacggccgccgacctgatcggcctggtgcaggccggtgcgctggag
atccacccctggggcagccgcatcgatcacctggaacagcccgacgggctggtattcgac
ctcgaccccgacgaaggcatcgcctggaaggagatcctgcgcgtcgccggcaccctgcgg
gagcgcctcgagtcgctggggctgacgcccttcctgcgcaccaccggcggcaagggcttg
cacctggtggtgccgctcgaacccagcgccgagtgggagcaagccaaggccttcgccaag
ggagtggccgaagcgcatgccaaggacgaccccaagcggctgaccaccaacatgtccaag
gccaagcgcgaagggcgtattttcatcgactacctgcgcaacggccgcggcgccacggcg
gtggcctcctataccgtgcgcgcacgcaggaacgccccggtggcggtaccgatccgctgg
gacgagctcaacgccgcgctacgcgccgaccgctacaacgtcgggaacctgcggcggcgg
ctctcggcgctgggcgaggacccctgggcggggttcgacgaggcggcgcgcccgctggat
acccagctgctcaaggccgtgggcgtgaagtga

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