Billgrantia campisalis: I4484_04370
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Entry
I4484_04370 CDS
T07024
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hcam
Billgrantia campisalis
Pathway
hcam03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hcam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I4484_04370 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcam03400
]
I4484_04370 (ligD)
Enzymes [BR:
hcam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I4484_04370 (ligD)
DNA repair and recombination proteins [BR:
hcam03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I4484_04370 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QPP50360
UniProt:
A0A7T2DBW9
LinkDB
All DBs
Position
complement(927007..929559)
Genome browser
AA seq
850 aa
AA seq
DB search
MERLEEYRRKRDFTRTREPAGEARSEAAAGNLYVMHKHAASHDHFDLRLEQEGVLRSWAL
PKGPSLEPGEKRLAVEVEDHPLEYGEFEGVIPQKAYGGGTVMLWDRGTWQLKGKPKPDRI
DIELDGERLKGSWTLTRMSGKRQDKHGRNWLMIKRHDDKARMEDSLTVELDASVASGRSM
REIAEDRDNTWGSADDAGEATLAPPDPSGLDGARRAKLPREVKPQLATLAREVPAQGEWI
HEIKLDGYRLLARIDQGEVRLITRNGKDWTHRFPEIARVLEPLPVDSALLDGEVVAMGKD
GVSRFGDLQEALSSGRTAALAYQVFDLPYLSGYDLAGVPLLERKRTLAALLDAADMENGT
IRYSDHLETHGRAFHERACQMGLEGIICKRADSRYQQKRSRNWLKVKCVSHEEFVVGGYT
DPGGSRSGFGSLLMGAYGRQGLVYAGRVGTGFNNRLLERLSATLQALEVKRSPFHGSVPD
GRSVHWVRPELVIEVEFTERTRDGRLRHPAFRGLREDRNPEEIRMTPTKEMAAQGTPEEH
DSPGKPATRKRRDETSLLGVRLTHPERVLFPEQGLTKLDLARFYEQIHEWVLPHLARRPL
SLVRCPQGRNDECFFQKHPRRAIPASVPRIDVPEKQGSAEYVYVETAADLIGLVQAGALE
IHPWGSRIDHLEQPDGLVFDLDPDEGIAWKEILRVAGTLRERLESLGLTPFLRTTGGKGL
HLVVPLEPSAEWEQAKAFAKGVAEAHAKDDPKRLTTNMSKAKREGRIFIDYLRNGRGATA
VASYTVRARRNAPVAVPIRWDELNAALRADRYNVGNLRRRLSALGEDPWAGFDEAARPLD
TQLLKAVGVK
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atggaacgactcgaggagtaccgccgcaagcgcgacttcacgcggacgcgcgagcccgcc
ggcgaggcgcgaagcgaagccgccgcgggcaatctctacgtgatgcacaagcatgcggcg
agccacgaccacttcgacctgcgcctggagcaggagggcgtgctcaggagctgggccctg
cccaaggggccgagcctcgagcccggcgagaagcgcctggccgtcgaggtggaggaccac
ccgctggagtatggcgagttcgagggggtcatcccccagaaggcctacggcggcggcacc
gttatgctatgggaccgcggcacctggcagctcaagggcaagcccaagccggatcgaatc
gacatcgaactggacggtgagcggctcaagggcagttggacgctgacccgcatgagcggc
aagcgccaggacaagcacgggcgcaactggctgatgatcaagcgccacgacgacaaggcg
cgcatggaggattcgctcacggtggaacttgacgcgagcgtcgccagcgggcgcagcatg
cgcgagatcgccgaggatcgcgataacacctggggctcggccgacgatgcgggtgaggcc
acgcttgccccacccgaccccagcggcctcgacggtgcccggcgggcgaagctgccgcgc
gaggtgaaaccgcagcttgccaccctggcccgcgaggtgccggctcagggcgagtggatc
cacgagatcaagctcgacggctatcgtctgctcgcgcgtatcgaccagggcgaggtgcgc
ctgatcacccgcaacggcaaggactggacccaccgcttccccgagatcgcccgggtgcta
gagccgctgccggtggattcggcgctgctcgacggcgaggtggtggccatgggcaaggac
ggggtcagccgcttcggcgacctgcaggaggcgctgtccagcggccgcaccgctgccctg
gcctatcaggtgttcgacctgccctatctgtcaggctacgacctggccggcgtgccgctg
ctcgagcgcaagcgcaccctggcggcactgctcgacgccgccgacatggaaaacggcacg
attcgctactccgaccatctcgagacccacggcagggccttccacgaacgcgcctgtcag
atgggtctcgagggcatcatctgcaagcgcgccgacagccgctaccagcagaagcgcagc
cgcaactggttgaaggtcaagtgcgtcagccacgaggagttcgtcgtcggcggctatacc
gaccccggcggctcgcgtagcggcttcggctcgctgctgatgggcgcctacggcaggcag
ggactggtctacgccggccgcgtcggcaccggcttcaacaaccgcctgctggagcggctg
agcgccaccctgcaggcactcgaggtgaagcgttcgcccttccacggcagcgtgccggac
ggtcgctcggtgcactgggtacgccccgaactggtgatcgaggtggagttcaccgaacgc
acccgcgacggccgcctgcgccacccggcctttcgcggcctgcgcgaggatcgcaacccg
gaggagatccgcatgaccccgaccaaggagatggccgcccaaggcacgccggaagagcac
gacagcccgggcaagccagccacccgcaagcgcagggacgagacctcactgctcggcgta
cgcctcacccaccccgagcgggtgctgtttcccgagcagggcctgaccaagctcgacctg
gcgcgtttctacgagcagatccacgagtgggtgctgccccacctggcccgtcggccgctg
tcattggtgcgctgcccccaagggcgcaacgacgaatgcttcttccagaagcacccgcgc
cgcgccattcccgccagcgtgccgcgtatcgacgtgcccgaaaagcagggcagcgccgag
tacgtctacgtcgaaacggccgccgacctgatcggcctggtgcaggccggtgcgctggag
atccacccctggggcagccgcatcgatcacctggaacagcccgacgggctggtattcgac
ctcgaccccgacgaaggcatcgcctggaaggagatcctgcgcgtcgccggcaccctgcgg
gagcgcctcgagtcgctggggctgacgcccttcctgcgcaccaccggcggcaagggcttg
cacctggtggtgccgctcgaacccagcgccgagtgggagcaagccaaggccttcgccaag
ggagtggccgaagcgcatgccaaggacgaccccaagcggctgaccaccaacatgtccaag
gccaagcgcgaagggcgtattttcatcgactacctgcgcaacggccgcggcgccacggcg
gtggcctcctataccgtgcgcgcacgcaggaacgccccggtggcggtaccgatccgctgg
gacgagctcaacgccgcgctacgcgccgaccgctacaacgtcgggaacctgcggcggcgg
ctctcggcgctgggcgaggacccctgggcggggttcgacgaggcggcgcgcccgctggat
acccagctgctcaaggccgtgggcgtgaagtga
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