Hemicordylus capensis (graceful crag lizard): 128335550
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Entry
128335550 CDS
T08891
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
hcg
Hemicordylus capensis (graceful crag lizard)
Pathway
hcg03013
Nucleocytoplasmic transport
hcg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hcg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
128335550 (UPF3B)
03015 mRNA surveillance pathway
128335550 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcg03019
]
128335550 (UPF3B)
Messenger RNA biogenesis [BR:
hcg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
128335550 (UPF3B)
mRNA cycle factors
P-body specific factors
128335550 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
128335550
NCBI-ProteinID:
XP_053130020
LinkDB
All DBs
Position
11:complement(23938284..23949503)
Genome browser
AA seq
507 aa
AA seq
DB search
MGARGQRRRAGPAAAAATAMKEDKENARPKEKRGGPPVAAGLGLAAALAGADAKGGGEPD
RLERPKDKKETLSKVVIRRLPPSLTKEQLEEHLQPLPDHDYFEFFANDSSLYPHMFSRAY
INFKNQEDIVLFRDRFDGYVFVDHKGLEYPAVVEFAPFQKAAKKKNKKKDAKAGTIEDDP
EYKKFLESYSADDEKLTSTPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREER
RRRELERKRQREEERRKWKEEERRKRKEAEKTKRVERCPEKERDRSKDEPKIKLLKKPEK
DERDFEKKEKAKKLEKDSLREEKAASAISSAPAKRSDGEIKEEKAKKLVFSLQLEDDCGK
DYRERERDYDRDREYERIQHERDKVRRQEEERRKQKERFEKEKVFRRKDDDVKKERDALR
EKGKRAELADYIGNTEKSERLTKEDKKEEMAKRDRIRNKDRPAMQLYQPGARGRSRLSAY
DESSPKSPDQVAEKKLECETSNAKKEE
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcgcgggggcagaggcgcagggcagggccggccgctgctgctgcgactgccatg
aaggaggacaaggagaacgccaggcccaaggagaagcggggcgggcctcccgtcgcggcc
gggctcgggctggcagcggcgctggccggggcggacgccaagggcggcggggagcctgac
aggctggagcggcccaaggacaagaaggagacgctcagcaaggtagtgattcgccgatta
cctcccagcttgaccaaggagcagcttgaagaacatcttcagcctttacctgaccacgac
tactttgaattctttgctaatgattccagtttgtaccctcacatgttttccagagcatac
atcaactttaaaaaccaagaggacatagttctattcagggatcgctttgatggttatgtt
tttgttgatcacaaaggtctagaatatcctgccgtagtggaatttgcaccatttcaaaaa
gctgccaaaaagaagaataagaaaaaggatgccaaagctgggaccattgaagatgatcca
gagtataagaagtttttggaaagctacagtgctgatgatgaaaaattaacttccactcct
gagactttactagaggaaatagaggcaagaaacaaagaattaatagccaaaaagacaact
cctttgttgaactttttgaagaacaaacagaggctgagggaagaaaaacgagaggagagg
cggcggcgagaactagagagaaaaaggcaaagggaagaagagcgaagaaaatggaaagag
gaagaaaggagaaaaaggaaagaagctgaaaaaacaaaaagagtggagaggtgtccagag
aaagaaagagaccgatcaaaggatgaaccaaagattaagctacttaagaagccagaaaaa
gatgaaagagactttgaaaaaaaggaaaaggccaagaaactggagaaagacagtctgagg
gaggaaaaggctgccagtgcaatcagcagtgcccccgccaagcgctctgatggggagatt
aaagaggagaaggccaaaaagttagtgttctctttgcaactggaagatgactgtggaaaa
gattacagggaaagggaaagagactatgacagagacagagagtatgagagaatccagcat
gagagagacaaagtcaggcgccaagaggaagagcgccggaagcagaaagagcgctttgag
aaggagaaggtgttccggagaaaagacgacgatgtgaaaaaggagagagacgccttgcga
gagaaaggaaagagagctgaactggcagactacatcggcaacacggagaaatccgagagg
ctcaccaaagaggataaaaaagaagagatggcgaagagggatcgcatcagaaacaaggat
cgcccagcaatgcaactttaccaaccaggggctcggggccgaagtcgtctctctgcatac
gatgaaagctccccaaagtcccctgaccaagtagcagagaagaagctggagtgtgagacc
agtaatgcaaaaaaggaagagtga
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