Hahella chejuensis: HCH_02683
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Entry
HCH_02683 CDS
T00307
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hch
Hahella chejuensis
Pathway
hch03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCH_02683 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hch03400
]
HCH_02683 (mfd)
Enzymes [BR:
hch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HCH_02683 (mfd)
DNA repair and recombination proteins [BR:
hch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HCH_02683 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
SecA_DEAD
RecG_dom3_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ABC29471
UniProt:
Q2SIQ3
LinkDB
All DBs
Position
complement(2751657..2755106)
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AA seq
1149 aa
AA seq
DB search
MTERRQLPSNSTTIKYWPQAVGQSDAYILAQALKEQKRLLVVITPDMPSADQLESAVKFF
LGDAKKNESTPPILTLPDWETLPYDTFSPHQDIISQRIQTLHNLPTCASGLLIVPLSTIM
VRLAPKEFVQRSTLILRKGQPLRIDSYRSELEQAGYRCVDTVYEHGEFAVRGSILDIFPM
GSKAPFRIDLFDEEVETLRQFDPETQRSASQVDEISLLPAHEFPLNEASIQLFKDNFYEK
FPGASRNIPLLQDISRGIATPGLEYYLTLFFTETASLLDYVARDACFALYDGLHEKALHF
WKDLEQRYEDLRHDIQRPILPPADIYLRVEELFEGLKQFPRAQFSAKSEESDKPFAPLPH
LALDAKKENPLQAIDCAQQDTGYKIILCAESAGRQQALMDTFKEHGRPLTLLESWEACLN
SNERWNITVAELAKGFADNENQILVVAEADLYEGRVLQRRRRKRAQESPENIIQNLTELK
LNAPVVHIDHGIGRYKGLQSLEVDGQKQEFLVLEYANEAKLYVPVSSLHLISRYAGLDDK
LAPINKLGTDRWSAAKRQAAEKIKDSAAELLEIYAKRELHTGYACPPPDEHYRAFSAAFP
FEETPDQATAINAVLQDMMKPRPMDRLVCGDVGFGKTEVAMRAAFLAAHAGRQVAILTPT
TLLAQQHFQSFQDRFADTAINIELISRFRSAGDIEKVKDKLSDGKVDILVGTHKLLQKDI
QFKNLGLLIIDEEHRFGVQQKEKVKSLRANIDILTLTATPIPRTLNLSFQGVRDLSIIAT
PPEKRLSVKTFVQEHNNSIIKEAVLREILRGGQVFFLHNEVNTINKAASELQEMVPDARV
AVAHGQMRERELERVMSDFYHKRFNVLMCTTIIETGIDIPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPPRNLTEDAKKRLDAISSAQDLGAGFTLATHDLEIRGAGEL
LGEEQSGHIQNIGFTLYLQLLDAAVKAMREGKELDLTQPIDQGCEVNLRLPALIPDDYLP
DVHNRLILYKRIASAKDEDALQSMQIEMIDRFGLLPDATKNLFRQAHLKLTADRLGMARI
DIGAKGGVIEFNAKTTIEPIKLVNLIQREPKHYKLDGGSKLRVTRSLEDKEDRMQFVEKL
LKSFAPARA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
ttgacagaacggcgccaacttccttcaaattcaacgactatcaagtactggcctcaggcc
gtcggacagtcagacgcttacattctggcgcaggcgctcaaagagcaaaaacgcctgttg
gtggtaataacaccagatatgccctcggcggatcagctcgaatcggcggtaaaatttttt
ttaggggatgcgaaaaaaaatgagagcacgcccccaattttgactttgccggactgggaa
accctcccttacgatactttttcgcctcaccaggacattatttcccaacgtattcagacc
ctgcataacctaccgacttgcgccagcggcctgcttatcgttcccctcagcaccatcatg
gtgcgtttggcgccgaaagagtttgtgcaacgctccaccctgatccttcgtaaaggtcag
ccgctcaggatagacagttatagatctgagctggagcaagccgggtatcgctgcgtggat
accgtctatgagcatggcgaatttgcggtcagaggatcgattctcgatatatttcccatg
ggctccaaagcgcccttccgtatcgacttatttgatgaggaagtcgagactctgcgccag
tttgacccggagactcaacgttccgccagtcaggtagatgaaatcagcctgctgcccgcg
catgagtttccccttaatgaagcctccattcagttgttcaaagacaacttctacgagaag
tttcccggcgcttcacgcaacatcccgttgttgcaagacatcagtcgtggtattgctacg
cccggactggagtattacctcactttatttttcaccgaaaccgccagcctgctggattat
gtcgccagggacgcctgtttcgccctttacgacggattacatgagaaagcactgcacttc
tggaaagatctggagcagcgctacgaagatctgcgccacgatattcaacgccccatttta
cctccggcggatatctatctgcgggttgaagagctgttcgaagggttgaagcagtttcca
cgcgcgcagttcagcgccaagtccgaggagtccgacaaaccgttcgcgcccctcccccat
ctggccttggacgccaagaaagagaatccattacaggccattgattgcgcccaacaggac
accggttacaagatcatcctgtgtgctgaatccgctggacgccaacaagcgttgatggac
acgttcaaagaacatggcagaccgctcacgttgctggagtcctgggaagcgtgcctgaat
tctaacgagcgatggaatattacagtagcggagctggcgaagggcttcgctgacaacgag
aaccagattctggttgtcgcggaagccgatctatatgaaggcagagtcctgcagcgtaga
cggcgcaagcgggcgcaggaaagcccggaaaacatcattcagaacctgaccgagctgaag
cttaatgcgccggtcgtacatatcgatcacggcatcggccgctacaaaggtttgcagtca
ctcgaagtggatggccagaagcaggagtttctggtgctggaatacgccaacgaagccaaa
ctttatgtgccggtttcctctctgcacctgatttcccgctacgccggacttgacgacaag
ctcgcgccgatcaataaactcggtacggatcgctggtccgccgccaagcgtcaggcagcg
gaaaaaatcaaagacagcgcagcggaactgctggaaatttacgccaaacgggagctacat
acaggttacgcctgcccgccgccggacgagcattatcgcgccttttccgccgccttcccg
tttgaagaaacgccagatcaggccaccgccatcaacgcggttttgcaggatatgatgaag
cctcgccccatggaccgtctggtctgcggcgatgtaggattcggtaaaacggaagtcgcc
atgcgcgccgcatttctcgccgcacacgcagggcgccaggtggcgatactgacgcccacc
actctgctcgcgcagcagcactttcagtccttccaggaccgtttcgcggacacggcgatc
aatatcgaactgatctctcgctttcgcagcgccggcgatatagagaaagtcaaagacaag
ctatcagacggcaaagtcgacattctcgtcggcacccataagctgctgcagaaagacatc
cagtttaagaacctcggcttattaatcatcgacgaggagcatcgttttggcgtgcaacaa
aaggagaaggttaaatctctgcgcgccaacatcgatatactcaccctgaccgcgacgccg
attccgcgaaccctgaatctttcctttcagggcgtgcgcgatttgtcgattatcgctaca
ccgccggagaaacgcctgtccgttaaaaccttcgtgcaggagcacaacaacagcattatc
aaagaagccgtgctgcgggaaattttgcggggcggtcaggtgttcttcctgcataacgaa
gttaataccattaataaagccgcctcagagctgcaggagatggttccggatgcgcgcgtg
gctgtcgcccatggccagatgcgggaacgcgaactggaaagggtcatgtcggatttttac
cataaacgcttcaatgtgctgatgtgcaccacgatcattgaaaccggtatcgacatcccc
tccgccaacaccattatcatcgagcgcgcggacaaattcggcctggcgcagttgcaccag
ttgcgaggccgggtcgggcgctctcatcaccaggcctacgcctacctgctgaccccgccg
ccacgcaaccttactgaggacgccaaaaagcgattggacgccatcagcagcgcgcaggac
ctgggcgctggattcaccctcgccacccacgatctggaaattcgcggcgccggggagttg
ctcggcgaggagcaaagcgggcatatccagaacataggtttcactctttacctgcaatta
ttggacgccgccgtcaaagccatgcgcgaaggcaaagagctggatctcacccagcctatc
gaccagggttgtgaggtcaatttgcgcttgcccgctttgatccccgacgactatctgccg
gatgtccataaccgcctgattctgtataagcgcatcgccagcgccaaggacgaagacgcg
ttacagtccatgcaaattgagatgatagaccgctttggtctcttgcctgacgcgaccaaa
aacctgttccgtcaggcgcatttgaaactgaccgccgacaggctgggcatggccagaatt
gatattggcgccaagggcggcgtaatcgaattcaacgctaaaaccaccatcgagccgatc
aagctggtcaacctcattcagcgcgagcccaagcactacaaactggacggcggctccaag
ctacgcgtcactcgctcattggaggacaaggaggaccgtatgcaattcgtggaaaaactt
ctgaaatccttcgctcccgcccgcgcttaa
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