Hydrogenimonas cancrithermarum: HCR_22810
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Entry
HCR_22810 CDS
T09533
Name
(GenBank) RNA helicase
Organism
hcj
Hydrogenimonas cancrithermarum
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
MZB
DZR
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BDY13968
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All DBs
Position
pISO32_1:complement(5699..10486)
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AA seq
1595 aa
AA seq
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MSYFIPIVDRILHEKEKDPTPKTSAIIIYPMNALANSQIEELEKFFQDFGEDRPVTYARY
TGQENSEERQRIASNPPDILLTNFMMLELLLIRQDDVDKSVIRNAEGLEFLVLDELHTYR
GRQGADVAMLIRRVRERLNPDLLCIGTSATMASEGTEEERNKVVADVAGRLFGAEVRVEN
IITETLERATDPFLMKEDILPQLEEAVSQVKEEYAYGELIHNPLAIWVELTMGLELKENK
WVRAKPITIEAAAKKLASDLQCDDIDFCRKQLSKFLLAAYKTQKDGHSFFAFRLHQFISG
AGNLYATLEEEGSRYLTLEGQQFVPGDRRRRLFHTHFCRECGQEYFPVWNQGTHLDSRSL
DETLGENENEFGFFMPDTDGVWEDNIENYPENWIDFTRAEPRLKKDYVKKKPVPVKVLPD
GAIDEKGIHGWYIPGKFRFCLSCGVSHGAQGRDASRLASLSGEGRSTATTILTMSVLRYF
YERDQELPPEAKKILAFTDNRQDASLQAGHFNDFIHILLLRASLVKALANNARTLNEQTI
AMEVFKALGFDKEANRTEFTHPEKAGAKGQLRRKIEETMRNMLGYRLYFDLRRGWRINNP
NLEQLGLLHIDYIDLDEVAADESEWQEAPDFVKQASPEVRKEVLKQMLDTMRQGLAIKSR
YLDPHFLERLKNDSFANLKEPWSFSEDEEPVSSRYFYFGKLPRGISKAEKEILISGSSRS
RLGRILKQARTWNADPKNFERITDDTYPAIIFSLLQPLLNYGIIEKSDSDYDIDTYQLSS
DALIWKLVEEGEEEKHLKSKAANNPFFRDLYRNIAAALGSDVHQLFNFESHEHTAQVDAE
TREKREESFRKAKLPVLFCSPTMELGVDIATLNAVYLRNVPPTPANYAQRSGRAGRSGQP
ALILTYCAAQSPHDQYFFSDPVRMVHGEVKAPTLDLSNQDLVRSHIHSLWLSETGVKLDN
SIRGLLDLEKSEMSLKNDLEVSLSERDLTMRTHKRANKIVAMLSEELTHEKAPWYDGEWV
DKVVGGTMEAFDRALDRWRDMYKATTAQIEISSQILNDSSVSHKERKEAKSRLDEAYRQK
ELLLQERATLNSDFYTYRYLASQGFLPGYNFPRLPLMAYIPGRSKKAGGETYLTRPRFLA
LSEFGPFSLIYHEGSQYRVVRAMLTLSSDSEVAADNTLPKTYAKICPNCGYGHFQSQRDA
ELCIACGTKLSDAFEIPNLYRIDNVSTKRALRITADEEERMRQGYEMQTTFQFAVEHGIL
QHTDAEAMEEEQAILKLQYAPSATVWRMNLGWRRRKERTILGFNIDPVTGYWTKGEEPDS
DGAPDPDVVRAERIVPFVEDRRNILIVHPAEQMDEVEMITLQYALKRGIESVFQLEESEL
MVEPLPNKETRNAILFYEASEGGAGVLTRLAHDAQALSRVAGRALQIMHFEVKERCTIEN
LKEITQPDGTPICEAGCYKCLLSYYNQPDHGKIDRKNEKVLALLCRLTAAAVVQEETPLE
VAEHAGLNSLQKALEELMIEMGLPLPDRWNTKAAGFKVDALYIQSQVALLLSSADEKVLE
TLEDHGYIPLFLGDDPKHWKERLNRNKELLEGVSL
NT seq
4788 nt
NT seq
+upstream
nt +downstream
nt
ttgagttactttatccccatcgtcgatcgcattttgcatgaaaaagaaaaagatccgacg
ccaaaaaccagtgcaatcatcatctacccgatgaatgctctcgcaaacagccagatcgag
gaactcgaaaaattttttcaggactttggtgaagataggccggtaacctatgcccgttat
acggggcaggagaatagcgaagagcgtcaacgtatcgcaagcaatccgccggatatactg
ctgacgaacttcatgatgctggaacttttgctaatccggcaggatgatgtcgacaaatcg
gttattcgcaatgcggaagggttggagtttctggtgctcgatgagttgcatacttacaga
ggacgccaaggggcggatgtggcgatgcttattcgccgtgtgcgcgaacggctaaatccc
gatttgctttgcatcggcacctccgcgacgatggcgagtgaagggacggaggaggaacga
aacaaagtagttgcggatgtagccggccgacttttcggggctgaagtaagggttgaaaac
atcattaccgaaacgctcgaacgtgccaccgatccgtttctgatgaaagaagatatattg
ccccagctcgaagaagcggtctcccaagtcaaagaggagtatgcctacggtgaattgatt
cataaccccttggcgatatgggttgagctgacaatggggcttgaactgaaagagaataaa
tgggtgcgtgccaaaccaatcacaatagaggcagcggcgaaaaaacttgcttccgatcta
caatgcgatgacatagacttttgcaggaaacagctctccaaatttcttcttgctgcctat
aaaactcaaaaagatggtcactccttttttgcattcaggctccatcagttcatttccggc
gctggcaatctctatgccactttggaagaggagggaagtcgctatctaacgctcgaggga
caacagtttgttccaggtgaccgtcgccgccgcctctttcacacccatttttgccgagag
tgcggacaggaatatttccccgtatggaatcagggtacccatttggattccagatcgctt
gatgaaactcttggcgaaaacgaaaatgaatttggatttttcatgccagacaccgatggg
gtttgggaagacaacatcgaaaactatccggaaaattggatcgactttacccgagccgaa
ccgcgactcaaaaaagattatgtcaaaaaaaagcccgtaccggtaaaagtattacctgat
ggagctatcgatgagaaaggtattcacggatggtatatccctggtaaattccgtttctgt
cttagctgcggtgtttcccatggagctcagggacgcgatgcttcgcgcctggcctctttg
agtggagaaggaagaagcactgctacgacgattctaaccatgtcggtacttcgctatttc
tacgaaagggatcaagaattgccgccggaggcgaaaaagattctcgcttttacggacaat
cgccaggacgcatccttgcaggctggacacttcaacgatttcatccatatccttcttttg
cgcgcttcactcgtcaaagcgcttgccaacaatgcgcgaaccttgaatgaacaaacaatt
gccatggaggtctttaaagccctcggattcgacaaagaagccaatcgtacagagtttacc
catcccgaaaaggcaggggcaaaaggacagttacgccgcaagatcgaagagacgatgcgc
aatatgctgggatatcgcctctatttcgatctcaggcgtggatggcgcataaacaatccc
aaccttgaacagctggggctgctgcatatcgactatatagatctcgacgaagtggctgct
gatgagagtgaatggcaggaagctcctgactttgtcaaacaggcttctcctgaagtgcga
aaggaggttctaaagcagatgctagatacgatgcgccagggacttgcgatcaaatcgcgt
tacctcgatcctcacttcctggagcgattgaaaaacgacagttttgccaacctcaaggag
ccttggtcttttagcgaagacgaggagccggtctcttcccgctatttctatttcggtaaa
ctccctcgcggtatatccaaagccgaaaaagagatattgataagcggcagtagccgctcc
aggctgggacgcattctcaagcaggccaggacatggaatgccgatccgaaaaattttgaa
cgcatcactgacgatacctatcctgcgatcatcttttcacttttgcagccattgctgaat
tacgggatcatagaaaagtccgattccgactacgatatagatacctatcaactcagtagc
gacgctctgatatggaaactcgtagaagagggtgaagaggaaaaacatctcaaatccaag
gcggcgaacaacccattcttccgtgatctctatcgcaacatcgccgccgcactcggctcc
gatgtacaccagctcttcaattttgaaagccacgaacatacggcgcaggtcgatgccgag
acacgagagaaacgtgaagaaagcttcagaaaagcgaaactacccgtgctcttctgctct
ccgacgatggagcttggtgtcgatatcgcgacgctcaatgccgtctatctgcgcaatgtg
cctcccacgccggcaaactacgctcaacgaagcggccgggcgggtcgttccggccaaccg
gcgctgattctgacctattgcgcggcacaaagcccccacgatcagtactttttctccgat
cctgtgcgcatggtgcatggagaggtcaaagcccccactcttgatctctccaaccaggat
cttgttcgcagtcacatccactccctctggctttctgaaaccggagttaagctcgacaac
agcatccggggcctgctcgatttggaaaagtccgaaatgtctctcaaaaacgatcttgaa
gtgtctctgtcagagcgagaccttaccatgcgtacccacaaaagagccaataaaattgtc
gccatgctttcagaagagctcacacatgaaaaagccccttggtacgatggggagtgggtg
gataaagtcgtcggcggcacgatggaggcattcgatcgtgcgctcgatcgctggcgtgac
atgtacaaggcgaccacggcgcagatcgagatcagcagtcagatcctgaatgactccagt
gtaagtcacaaagagcgcaaggaggcgaagagccgattagacgaagcctatcggcagaaa
gaacttcttcttcaggaaagagcgaccctcaattccgacttttatacctatcgctacctg
gcatcccaggggtttctgccgggatacaactttccccgcctgccgctcatggcctacatt
ccgggtcgtagcaaaaaagccggcggagagacctatcttacacgcccgcgttttctggcg
ctttccgagttcggtcccttcagtctcatctatcacgagggaagccaatacagagtcgtg
cgtgcaatgctcaccctttccagcgattccgaagtggcggcggacaataccctgcccaaa
acgtatgccaagatctgtcccaactgtggctatggtcacttccaatcccagcgcgacgcc
gagctatgtatcgcttgtgggacaaaactctccgatgccttcgaaatccccaatctctac
cgtatcgacaacgtctccacgaaacgcgccctgcgcattaccgccgacgaagaggagcga
atgcgccaggggtacgaaatgcagacgacctttcaattcgccgtagaacacggaattctg
caacacaccgacgccgaggccatggaggaagaacaggcgattttgaaacttcagtatgcc
ccctccgccaccgtctggcggatgaacctggggtggcgcaggcgcaaagagcgcactatt
ctgggattcaatatcgatccggtcaccggttattggaccaaaggtgaagaacccgacagc
gacggagcgcccgatcccgatgtcgtcagggcggagcggattgttccatttgtggaggat
aggagaaatatcctcattgtccatcctgcggaacagatggacgaagttgaaatgatcacg
ctccaatatgccctcaaacgggggatcgagtcggtgtttcagcttgaagagagtgaactg
atggtcgaaccgttacccaacaaagagacccgcaatgcgattttgttctatgaagcctcc
gaaggcggtgcgggagtattgaccaggctcgctcacgatgcgcaggcgctttctagagtt
gcgggacgcgccttgcagatcatgcactttgaggtcaaagagcgatgcactatagagaac
ctcaaagagattacacagcccgatgggacacctatctgtgaggcgggttgttacaaatgt
ctgttaagttactacaatcagcccgatcacggcaagatagaccgtaaaaacgaaaaagtt
cttgcacttttgtgcaggcttaccgccgctgccgtcgtacaggaggagacgccgttggaa
gttgcggagcatgccggtctaaacagccttcaaaaggcgctggaggagttgatgatcgag
atgggactgccgttgccggatcgttggaacacaaaggcagccggtttcaaagtagacgca
ctctatatccaatcccaagtagcgcttttactctcatccgcagatgaaaaggtgcttgaa
acactggaagatcacggatatattcctctttttctgggtgacgatccgaaacattggaaa
gaacgtttgaaccggaataaagagttgttggaaggagtgagtttatga
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