Halomonas chromatireducens: LOKO_00929
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Entry
LOKO_00929 CDS
T04292
Symbol
mfd_1
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LOKO_00929 (mfd_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hco03400
]
LOKO_00929 (mfd_1)
Enzymes [BR:
hco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOKO_00929 (mfd_1)
DNA repair and recombination proteins [BR:
hco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LOKO_00929 (mfd_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
E1-E2_ATPase
DEAD
UvrB_inter
Cation_ATPase
Helicase_C
CarD_TRCF_RID
Hydrolase
MFD_D3
ResIII
Cation_ATPase_C
Hydrolase_3
HAD
UB2H
AAA_22
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMD00006
UniProt:
A0A120JVR4
LinkDB
All DBs
Position
complement(976004..981187)
Genome browser
AA seq
1727 aa
AA seq
DB search
MSHFSLLDPPRPRCLRDTLFWHTPPGSGTALALAHLAEDAPLLVVTADTAGAQRLENDLR
FFSTTPVLPFPDWETLPYDSFSPHQDIVSARLRTLRRLQDGTHGIVLVAINTLMQRLPPV
EYIAGRVLTLEVGMRLDREGFRESLSRAGYRAVETVYEPGEYALRGALIDLFPMGSESPL
RIDLFDDEIDTLRHFDPDTQRSREKVDGVELLPAHEYSLARSAIACFREGFETLFDVDPR
QCPLYVDALKGIPSPGLEQYLPLFFENTATLFEHLAEGTRVALLPGVFDAAEHHWAAIES
RYENLGVDPTRPLLPPHRAFVPVAEAFAAIKQHPRVEITDDPDHRHALLPAAKAPPSVPI
NARAKQPLAALEAFLAQNPDTRTLFVAESRGRREALEETLAPLHLQLPHAADFHSFLDGD
SRLAITEGEIDAGLWLERPDLAVISETELLGDVVRQSRRREKATDANELAVRHLSELRPG
APVVHQTHGVGRYRGLETLEAGGQAAEFVALEYAEGARLYVPVDSLHLISRYAGADDELA
PLHRLGSDHWDKARRRAAEKIRDTAAELLDVYARREAREGFACTPPDDEYSRFAASFPFE
ETPDQRAAIAAVIGDMTAPRPMDRVVCGDVGFGKTEVAMRAAFLAVQSGRQVVVLVPTTL
LARQHYENFRDRFADTAVQIELISRFTAGKGQAESLQRIESGKADIVIGTHKLLSKSMKL
PNMGLIIIDEEHRFGVSQKERLKNLRAEVDILTLTATPIPRTLNMAMSGIRDLSIIATPP
ARRLSVKTFVQQRDESVIKEAILREILRGGQVYFLHNEVKTIEIAAEKVRELVPEARVAV
AHGQLPERALERVMSDFYHKRFNVLVCSTIIETGIDVPSANTIVIERADRFGLAQLHQLR
GRVGRSHHQAYAYLLAPPPRTMTRDAAKRLEAIAGAEDLGAGFTLASHDMEIRGAGELLG
EEQSGQMEAIGFIQEGKAEQALESIRDMLSPQANVLRGGKRQTIDAEELVPGDIVMVESG
DRIPADLRLIEAKRLRTEEAALTGESTPVDKQTEPVEENADLAERSAMAYASTIVAQGTA
VGLVVETGTRTEIGRISEMLRDVEQLKTPLLRQLDRAGRVLAIFILGAAALTATFGVIIH
DQAISAMFMAAVGLAVAAIPEGLPAIVTITLALGVQAMAKRNAIIRRLPAVETLGSISTI
FSDKTGTLTRNEMTAQAIWLPEGEFRLSGIGFKPEGELQLAPRDKESDEEGETISLDDYP
ALAHFLKVGVLCNDAELAKEEERWTIHGDPTEGALVVAAAKGDVDTHELREEHPRKDAIP
FESERKYMATLNDLDGSRLLVKGAPDRLLEMCHKVRGDDGDNDLDHQEWEDRIHALSSRG
LRVLALAEKDGEGISGELSDEHAEEGLVLLGLVGLLDPPREAAIEAVKQCLQAGIRPVMV
TGDHAVTARAIADQLGFAQTEEAVSGRELESMSDEELEKKILKVDVFARAAPEHKLRLVK
AMQAQGGICAMTGDGVNDGPALKRADVGVAMGIQGTEAAKEAAEMVLADDNFATIVNAIE
EGRKVYDNIRKTITFILPTNGGQGLAIMLAVLGGTMLPVTPLQALWVNMVVAVTLGLALA
FEKAEPDIMQRQPRDPSAALLEQSLDVGCRNMALDDIAIDQRRMTGGEFRGDTVFHLYRA
HIAGLVLANLEALLSEVIGPVGTTATVGILVHLDHRTGSVMRFEETS
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atgtcccatttctcactgctcgatccgccacgccccaggtgtctccgagacaccctcttc
tggcacacccctcccggcagcggcaccgccctggccctggctcaccttgccgaggacgcc
cccctgctggtggtaaccgccgataccgccggcgcccagcgcctcgagaacgacctgcgc
ttcttctccaccacgccggtactgccctttcccgactgggagaccctgccctacgacagc
ttttcaccccatcaggacatcgtctcggcaaggctgcgcaccctgcgccggctgcaggac
ggcacgcacggcatcgtcctggtggcaatcaacaccctgatgcagcgcctcccgccggtc
gagtacatcgccggccgagtactgacgctggaagtgggcatgcgcctcgaccgggagggc
tttcgcgaaagcctgtcccgggccggttaccgggcggtcgagaccgtatacgaacccggc
gagtacgccctgcgcggcgccctgatcgacctctttcccatgggcagcgagtctccgctg
cgcatcgacctgttcgatgacgagatcgatacgctgagacacttcgacccggacacccag
cgcagccgggaaaaggtcgatggcgtggaactcctgccggcgcacgaatactcgctggca
cgctcagccattgcctgtttccgcgaaggcttcgagaccctgttcgacgtggatccacgc
cagtgcccgctgtatgtggatgcactcaagggcataccctcccccgggctggagcagtac
ctgccgctttttttcgaaaataccgcaaccctgttcgaacacctggcggagggaacccgt
gtagcgctgctgccgggagtgtttgatgctgcagaacatcactgggcggccatagagagc
cgctacgagaatctcggggtggaccccacacgccccctgctaccacctcatcgcgccttc
gtgccggttgctgaggcgtttgcggccatcaagcagcacccccgggtcgagattaccgac
gaccctgaccaccgccacgccctgctgcccgcggccaaggcgcctccatcggtacccatc
aacgcaagggcgaagcagccgctagccgcccttgaggcgttcctggcccagaaccccgac
accaggacgctgttcgtcgccgaatcccggggccgtcgcgaagccctggaagagacgctg
gccccgctgcacctccagcttccgcatgcggccgattttcatagctttcttgacggtgat
agccgcctggcgatcaccgaaggcgagatcgacgccggcctgtggctggagcgccccgac
cttgccgtgatcagcgagaccgagctcctcggtgacgtggtgcgccagagccgccgccgg
gaaaaggcgaccgatgccaacgagctggccgttcgtcacctctccgagctgcgccccggc
gcccccgtcgtccaccagacccacggtgtcggacgctaccgcggcctggagaccctggaa
gccggcggccaggcagccgagttcgtcgcgctggaatacgccgaaggcgccaggctgtat
gtgcccgtggacagcctgcatctgatctcccgctacgctggcgccgacgacgaactggct
ccgctgcatcggctcggctccgaccactgggacaaggcacgccgccgtgccgccgagaag
atacgcgacacggcagccgagctgctcgatgtctatgcccgccgcgaggcgcgcgaaggg
tttgcctgcaccccaccggatgacgagtacagccgcttcgccgcgagcttccccttcgag
gagaccccggaccagcgtgccgccatcgccgcggtcatcggcgacatgacggcccctcgc
cccatggatcgggtggtctgcggcgacgtcggcttcggcaagacggaggtcgccatgcgc
gccgccttcctcgccgtacagtcaggccgccaggtggtggtgctggtgcccaccaccctg
ctcgcccgccagcactatgagaacttccgtgaccgcttcgccgacaccgccgtgcagatc
gagctgatctcgcgcttcaccgccggcaagggccaggccgagtcgcttcagcgcatcgag
tccggcaaggccgatatcgtcatcggcactcacaagctgctgtctaagtcgatgaaactg
cctaacatgggacttattatcatcgacgaggagcaccgcttcggcgtttcacagaaggag
cggctcaagaacctgcgtgcagaagtggacatccttacgctgaccgccacgcccatcccg
cgcaccctgaacatggccatgagcgggatccgcgatctctccatcatcgccacccctccc
gctcgccgtctgtcggtgaagacttttgtccagcagcgcgacgagtcagtgatcaaggag
gcgatcctgcgcgagatactgcgtggcggccaggtctacttcctgcacaacgaggtaaag
accatcgagatcgccgccgagaaggtgcgcgaactggtgccagaagcgcgggtggcagtg
gcccatggacaattgccggaacgcgcactcgagcgagtgatgtccgacttctaccacaaa
cgtttcaacgtgctggtctgttccaccattatcgagaccggcatcgacgtgcccagtgcc
aataccatcgtcatcgagcgcgccgaccgtttcggcctagcccagctccatcagttgcgc
ggccgggtcgggcgcagccaccaccaggcctatgcctacctgctcgctcccccaccgcgc
accatgacccgtgatgcggccaagcgccttgaggcaatcgccggagcagaggaccttggg
gccggcttcaccctggccagccacgacatggaaatccgcggcgccggtgaactactcggc
gaagaacagagcggccaaatggaggcgatcggcttcatccaggaaggcaaggccgaacag
gcgctggagagtatacgcgacatgctctcgccccaggcgaacgtgctgcgtgggggaaag
cggcagacgatagatgccgaggagctggtgcccggcgacatcgtgatggtggagagcggc
gaccggataccggcggatctgcgtctcatcgaagcaaagcgcctgcgtaccgaagaggcg
gcgctgaccggggagtccacgccggtcgacaagcagaccgaaccggtagaggaaaacgcc
gacctcgccgagcgaagcgccatggcctacgccagcaccatcgtggcccagggtacggcg
gtgggtctcgtggtggaaaccgggacccgaaccgaaatcggtcgtatctcggagatgctg
cgcgatgtggagcagctcaagacccccttgctgcgccagctggaccgggccgggcgggtg
ctggccatcttcatcctgggtgccgccgctctgaccgcaacgttcggcgtgatcattcat
gaccaggccatcagcgccatgttcatggccgcggtaggcctcgcggttgccgccatcccc
gaagggctacccgccatcgtgaccatcaccctcgcgctgggggtgcaggccatggccaag
cgcaacgccatcattcgccggctgcctgcagtggagaccctgggctcgatctccaccatc
ttctccgacaagaccggcaccctcacccgcaacgagatgacggcacaggccatctggctg
cccgaaggcgagtttcgtctttccggcatcggcttcaagccggagggcgagctgcaactc
gccccgagggacaaggagagtgacgaggagggtgagacgatctcactggacgattacccc
gccctggctcacttcctcaaggtcggcgtgttgtgcaatgacgccgagctggccaaggaa
gaggagcgctggacgatccacggcgaccccaccgagggagccctcgtcgtggctgccgcc
aagggcgatgtcgatacccacgagcttcgtgaggaacacccccgcaaggatgccattccc
ttcgagtccgaacgcaagtacatggccaccctcaacgacctggatggcagtcgtctgctg
gtcaagggcgcaccggaccggctgctggaaatgtgccacaaggtgcgcggtgacgatggc
gataacgacctcgaccaccaggagtgggaggaccgtatccatgccctctcgtcccggggg
cttcgggtactggcactggcagaaaaggatggcgaaggcatctccggcgaactcagcgac
gaacacgcggaagagggcctggtgctgcttggcctggtggggctgctggaccccccacgg
gaagcagcgatcgaggcggtcaagcagtgcctgcaagccggcattcgcccggtcatggtg
acaggtgaccatgccgtgactgcccgtgccatcgccgaccagcttggcttcgcccagacc
gaggaggcggtgagcgggcgcgagctggaatccatgagcgacgaggagctcgaaaagaag
attctgaaagtggatgtcttcgcccgcgccgcgccggagcacaagctgcgcctggtcaag
gcgatgcaggcccagggcggcatctgcgccatgaccggcgacggggtcaacgatggccct
gccctcaagcgtgccgacgtcggcgttgccatgggcatccagggcacagaggccgccaag
gaggccgccgagatggtgctggccgatgacaacttcgccaccatcgtcaatgccatcgaa
gagggacggaaggtctacgacaacattcgcaagaccatcacctttatcctgcccaccaac
ggcggccagggcctggcgatcatgctcgccgtgctcgggggaaccatgctgccggtgacg
ccgctgcaggcgttgtgggtcaacatggtggtggcggtgaccctgggcctggccctggcc
ttcgagaaggccgagccggatatcatgcagcgtcagccacgggatccatcggcggcactg
ctcgagcagtcgcttgatgtcggctgccggaacatggccctcgatgacatagccatcgat
cagcgccgtatgacaggaggagagttccggggtgacaccgtgttccatctttaccgagcg
catatcgcgggtcttgtgctggcgaacctcgaagccctcctctcggaggtgatcggccca
gtcggtacaacagccacagttgggatcctggtacatctcgaccaccgaacnggaagcgtc
atgcgattcgaagagacttcgtag
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