Hippocampus comes (tiger tail seahorse): 109519015
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Entry
109519015 CDS
T04969
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03013
Nucleocytoplasmic transport
hcq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
109519015 (upf1)
03015 mRNA surveillance pathway
109519015 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcq03019
]
109519015 (upf1)
Enzymes [BR:
hcq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
109519015 (upf1)
5.6.2.5 RNA 5'-3' helicase
109519015 (upf1)
Messenger RNA biogenesis [BR:
hcq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
109519015 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
109519015 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
AAA_16
nSTAND3
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
109519015
NCBI-ProteinID:
XP_019730804
LinkDB
All DBs
Position
Unknown
AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDEGLHNGGVEDSVAKASQLLAELNFEEDEEDAYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKATSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVTIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSF
LALHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRAKYGVIIVGNPKALSRQPLWNNLLNNYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGGRFMSTAMYDAREALIPGSAYDRSNAVGRPSNMYFQTHDQIGMIGAGPGHIA
AMNLPIPFNLVMPPMPPPSYLGQTNGPAAGRGAMKGNKPGRGGRQRPRGSAAHGAGHGPN
SQASQDGASQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccaagctcccagaccctcaccttcttggacaccgaggaa
gcggagttactcggagcggacacccagggttccgaatacgacttcaccgacttcaccctc
ccgagccagactcaaacccaaggccaaactcagagtcagctggacggccaggttaacggt
cctgatgagggtctccacaacggtggagtggaagactctgtggccaaagcgagccagctg
ttggcggaactcaattttgaggaggatgaagaagacgcctactacaccaaggacctgccc
gtgcacgcttgcagctattgtggcattcatgatccagcctgtgtagtgtactgcaacact
agcaaaaagtggttctgcaatggacgtggaaatacatctggcagccacatagtaaaccat
ttggtgagagccaaatgcaaagaggtgacacttcacaaagatggacccttgggtgagact
gtcctggagtgttacaactgtgggtgccgcaatgtcttcctcttgggtttcatccctgcc
aaggctgattctgtcgtcgtgctgctctgtagacagccttgtgctagccagagtagcctg
aaagacatcaactgggatagctcccagtggcagccgctgatccaagaccgctgttttctc
tcatggctggtgaaaatcccatcggagcaggagcagctgcgcgcccggcagatcaccgcc
cagcagatcaacaagctggaggaactctggaaggacaaccccactgccaccttggaggac
ctggagaagccaggggtggatgaggagccccagcatgtgttgctgcgctatgaggatgcc
taccagtaccaaaacatttttggtcctttggtcaaactggaggctgactatgacaagaag
ctcaaagagtctcagacccaagataatataacagtaagatgggacttgggactgaataag
aagcggattgcatatttcactctgccgaagaccgattcaggtgatatgcgcttgatgcaa
ggtgatgagatctgcctgcgctacaaaggcgacctggccccgctgtggaaagggattggc
catgtcatcaaggttccggacaactatggggatgaaattgctattgaactgcggagcagt
gttggagcccctgtggaaattccccataacttccaggtggactttgtgtggaaggctact
tcctttgatagaatgcagagtgctctgaagacctttgctgtggatgagacctcagtgtca
ggctacatttaccacaagcttttgggtcacgaagtggaagatgttaccattaagtgtcag
ctacccaagcgcttcactgcccagggcctacctgatcttaatcattcacaggtgtatgct
gttaagacggtgctgcagaggcctctcagcctgatccagggtcctcctggcaccggcaag
actgttacttctgccacgattgtctatcacctgtcacgtcagggcaacggaccagtcctg
gtatgcgctcccagcaacattgcagtggaccagttaactgagaagattgacaagactggg
cttaaggtggtcaggctgtgtgctaagagtcgtgaggctattgagtcaccagtgtctttc
ctggcattgcataaccagatcagcaatatggacagtatgccagaacttcagaaacttcag
cagctaaaggatgagactggcgagctatcttctgctgatgagaagcgctatagagccttg
aaacgcaccgctgagagggagctgctaatgaatgcagatgtgatctgctgcacctgtgtt
ggtgccggggaccctcgcctggccaagatgcagtttcgctccatcctgattgatgagagc
acccaggccactgagcctgagtgcatggtgcctgttgtgcttggagcaaagcagctcatc
ctggtgggtgaccactgccagcttggtcctgtggtgatgtgtaagaaggccgccaaggca
gggttgtcccagtccctgtttgagcgcttggtggttctggggatccgaccaattcgtctt
caggtccagtaccgaatgcatccagctctcagcgccttcccgtcgaacatcttctacgag
ggctccttgcagaatggagtgacagcagctgaccgcatcaagaagggctttgacttccag
tggccacagccagacaagcccatgttcttttatgtgactcaaggtcaggaggaaattgcg
agctctggaacctcctacctgaacaggaccgaggctgcaaatgtagagaaaatcaccacc
aggctgttgaaggcgggtgccaagcctgaccagattgggatcatcaccccatatgagggt
caacgttcctacctggtccaatacatgcagttcagtggctctctgcacactaaactctat
cagcaagtggaaatcgcaagtgtggatgccttccagggcagagaaaaagacttcatcatc
ctgtcttgtgttcgtgccaacgagcaccagggcattggcttcttgaatgatccacgtcga
cttaatgtggctttgaccagagccaaatatggagtgatcattgtcgggaaccccaaggcg
ctttcgaggcagcctctgtggaacaacctgctgaacaactacaaagagcagaaggtcctt
gtggagggaccgctcaacaacctgagggagagcctcatgcagttcagcaagccacgcaag
ctggtcaacactatcaatcctggcggacgtttcatgagcactgcgatgtatgatgcccgt
gaagctcttattcctggttctgcctacgaccgcagcaacgctgtcggtcgcccatccaac
atgtacttccaaactcacgaccagattgggatgatcggtgcgggtcctggtcacattgct
gcgatgaatctccctattcccttcaacctggtgatgccccccatgcctccgcccagttac
ttaggccaaactaacggccccgccgcaggccgtggcgctatgaagggcaataagccagga
cgtggcgggcgccagaggccccgtggctcggcagcccacggtgccggtcacggaccaaac
agccaggccagccaggacggggcctcccagcccttctcgcaggggccactgacacaaggc
tacatttcaatgagtcagccttcccagatgagccagcccggtctctcccagccagaactg
tcccaggacagttacttgggtgatgagttcaagtcccaaatcgacgtggctttgtcccag
gactcgacttaccagggtgaacgtgcataccaacatggtggggtgaccggcctgtcacag
tactag
DBGET
integrated database retrieval system
