Halobacterium sp. DL1: HALDL1_01085
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Entry
HALDL1_01085 CDS
T03878
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
hdl
Halobacterium sp. DL1
Pathway
hdl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hdl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HALDL1_01085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hdl03021
]
HALDL1_01085
Transcription machinery [BR:
hdl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
HALDL1_01085
Prokaryotic type
Archaeal type
TFB
HALDL1_01085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
TF_Zn_Ribbon
RB_B
DZR_2
OrfB_Zn_ribbon
FYVE
DZR
zinc-ribbons_6
DUF1272
PHF5
Motif
Other DBs
NCBI-ProteinID:
AHG05596
LinkDB
All DBs
Position
unnamed:229377..230321
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AA seq
314 aa
AA seq
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MATRDIYETTFDEDVQTDTRSNQCPECDGRVTTNTVETVCEECGLVVDEQRIDHGPEWRG
FDEDERERTGAPLTAARHDRGLSTEIGRGTDTNGNELSGKKRRRLARMRREQTRGRFQSK
AERNLAYGLGEVRRLASTLELSDSIRDQACQLFRSAQNEDLLRGRSIEAIATASVYGACR
CNDRPVILDEVADSARVELSRVRNAYKTLNTELGLPTPPRRPQSFIPRFASELDVADTVR
QRAFELAKGAEATIISNGCQPTGVAAACLYKAAREQGQFFTQTDLAEVAETTPVTIRTRW
NELEEVDDSKSAPA
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atggcaactagagacatctacgagacgacgttcgacgaagacgtccagaccgacacgagg
tcgaatcagtgtcccgagtgcgacggccgagtcaccactaatacagtcgaaaccgtctgc
gaggagtgtgggctcgtcgtcgacgagcagcggatcgaccacggaccagagtggcgaggg
ttcgacgaagacgagcgtgaacggactggcgctccgttgacggcagcgcggcacgatcgg
gggttgtcgacggagatcgggcgcgggaccgatacgaacgggaatgaactctccggaaag
aagcgacgccggctcgcccggatgcggcgtgaacagacgcgcgggcggtttcagtcgaaa
gctgaacgcaacctcgcatacgggctgggcgaggttcgccgtctggcgagtaccctcgag
ctctccgattcgatccgcgaccaggcgtgtcagctcttccggagtgcccagaacgaggac
ctgcttcggggcagatccatcgaggccatcgccacggctagcgtgtacggggcctgccgc
tgtaacgatcgaccagtgatactcgacgaggtcgctgattcagcacgcgtcgaactgtct
cgagtgagaaacgcgtacaaaacgctgaatacagaattaggactccctaccccaccgaga
aggccgcagtcgttcattccgcgcttcgcgtcagaattggacgtcgctgacacggtccga
cagcgggcgtttgaactcgcaaagggcgctgaagcgacgattatctcgaacggatgccaa
ccgacaggtgtcgcagcggcctgcctctataaggctgctcgggagcagggacaatttttc
acgcaaacagatctcgcagaggtggcggagacaacgccggtaacgatacgcacacgatgg
aacgaactagaggaggtcgacgattcgaagtcagcccccgcgtag
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