Hyphomicrobium denitrificans ATCC 51888: Hden_1069
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Entry
Hden_1069 CDS
T01265
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Hden_1069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdn03400
]
Hden_1069
Enzymes [BR:
hdn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Hden_1069
DNA repair and recombination proteins [BR:
hdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Hden_1069
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ADJ22883
UniProt:
D8JV67
LinkDB
All DBs
Position
complement(1118404..1119474)
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AA seq
356 aa
AA seq
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MARDRTTIGARTRAATTKPTAASRNGTRTPKMPVAAVKSTLPDFVDPCLATLVAAPPEGD
DWVHEIKFDGYRIQARIDGGDVRLITRSGLDWTDRFGALPEWLLKVHRGKALIDGELVVE
DSSGHSNFSELASALKSGDSGRFAFQCFDLLHLDGFNLMPTPLIERKDLLRQMLMRRQVP
GIRYSEHLTGDAARMLSEACRLGLEGLVSKRASRPYRSGRHDDWLKSKCIEVDEFVVIGY
VVSNVSANAVGALVVGYFDRKRLVYAGRVGTGFSQKSAADLMKELKPLAIATPSFASSLT
GLQRKGVVWVQPVLVAQIEYRAWTGDNLLRHAAFKGLREDKPAVDVRRPVVKSPKI
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcgcgacaggacgaccatcggagcacgaacgcgggctgcaacgacgaaaccgacc
gcagcgtctcgcaacggtacgcgaacgcccaaaatgcccgtcgctgccgtcaaaagcacg
cttcccgacttcgtcgatccctgtcttgcgacgctcgtcgcggcgccgcccgaaggcgac
gattgggtgcacgagatcaaattcgacggctatcgcattcaggcccgcatcgacggcggc
gacgttcggctcatcacgcgcagcggactggattggaccgaccgtttcggtgcgcttccc
gaatggttgctcaaagtccatcgcggcaaggcgctgatcgacggcgaactcgtcgtcgaa
gacagctccggacattcgaacttctcagaactcgcctcagcgctgaagagcggagattcg
ggacgcttcgcttttcagtgtttcgatcttctgcatctcgacggcttcaatctgatgccc
actcctctgatcgaacggaaagatctgcttcggcaaatgctgatgcgccgccaagtacct
ggcattcgctatagcgaacatctgaccggcgacgccgcgcgcatgctgagcgaagcatgc
cgtctcggcctcgaaggactcgtctccaaacgcgccagcagaccgtatcgctcaggccgt
cacgacgactggctgaagagcaagtgcatcgaagtcgatgaattcgtcgtcatcggatac
gtcgtctcgaatgtctcggcgaatgccgtcggcgcactggtcgtcggctatttcgaccgc
aagcgcctggtgtacgccggacgcgtcggaaccggcttttcccaaaagtcagccgccgat
ctgatgaaggaactgaagccgctcgcaattgccacgccgtcctttgcttccagtttgacc
gggcttcagcggaagggcgtcgtctgggtccagcccgtgctcgtcgcgcaaatcgaatat
cgcgcctggaccggcgacaacctgctgcgccacgcggctttcaaaggcttgcgcgaggac
aagcccgccgtcgatgtccgccgccctgtcgtcaagtctccgaaaatctga
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