Hyphomicrobium denitrificans ATCC 51888: Hden_2310
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Entry
Hden_2310 CDS
T01265
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdn03400
]
Hden_2310
Enzymes [BR:
hdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hden_2310
DNA repair and recombination proteins [BR:
hdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Hden_2310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
Viral_helicase1
DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ADJ24107
UniProt:
D8JRC2
LinkDB
All DBs
Position
2364199..2367789
Genome browser
AA seq
1196 aa
AA seq
DB search
MNLETKRLSLDALRAETDLHQGNAADPLASAWVRANAGTGKTHVLTLRVLRLLLAGTSPE
KILCLTYTKAAAAEMSRRVFDRLAGWVTADEKELEKDIRKVTGGDVSVETLQLARRLFAN
AIETPGGLKVQTIHAFAERLLQRFPLEAGVPPDFKILDDAAAGDLKARAIEQTLLDATSE
PETPLGRALDVIVRYATDTQFDKLISNAVEERRWLDVANRREAKAGATLADVAEIERHLR
QSLGVRAAIAVRELHEECAYVLSESDLRELTEHLATGKASDTGHVPTLQSAAGLTDAPRR
FEALSGYFLTATGEPRKTLMTKALASSKPGLNDRCLAAQQRLFALSKELKALSLVESSMA
LYVVAGIILHRYTEARRSAGALDFADLILKTKSLLEGDGGQAQWVLFKLDGGLDHILVDE
AQDTSPEQWDIVKALAHEFFMGAATRDGSPRTVFAVGDEKQSIYSFQGADPKMFADAGIR
FAALARDAGLIWKSIELTMSFRTVTPVLAAVDAVFADAAKTPGLTAGGPPPKHNAIRLGH
AGLVEMWPTEKPDDLNAADPWAPLSDTSEHSPANRLAERIADTIKGWLDRGERLESQGRE
IRAGDILILVRKRNPFAVPMVAALKRRGIAVAGSDRIALTDQIAVQDLMALGDFLILPED
DLALAAVLKGPIFGFDDDDLLAIAPGRKSKTLWSALLDSTGVKPEYRDAAETLKRWRAKA
DFTPPFEFFSSVLDRDGAREKMLRRLGPEAADVIDEFLDLALSYDDGTPPSLTQFLAELR
AIAPEVKRDMDHGRDEVRVMTVHGAKGLEAPIVFLPDTCTTASGDLSAASLVRLSGLPRP
DHIPEPIVWTVKGTSRLEAVTIARRGREAREHEERNRLLYVAMTRARDRLYIAGFEGKKG
RAESCWYDAISEALLPVAEEIDDNGKKVWRIETAQTAELDQSRGEKTRQLESEERPAFAS
ERARPEPKLSVPLAPSRLEPYAPDAEGEPIMSAKADAAATYDAPSPLAGNSEHRFLRGTL
THALLQHLPSVAASGREAIATAFVAKRGAVLSRKARDGIVRETLAILSSADFAPLFGPNS
MAEVPIAAVIPRPSGSGPALDLSGQIDRLAVTDDEVLIVDYKTNRPPPSEVRFVAPAYLY
QLAAYRLALGEIYPGRRVKAALLWTDGPRLMEVPADVLDGYQSRLWDLDVQSLDAS
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcgaaaccaaacgtctttctctcgatgcgctgcgcgcagagaccgacctccac
cagggcaacgccgccgatccgctcgcctcagcgtgggtcagggccaacgcggggacgggc
aagacgcacgtgctgacgttgcgcgttctgcgcttgctcctcgccggaacgtcgcccgaa
aaaattctctgcctcacctatacgaaagccgccgcagcggagatgtcgcgccgcgttttc
gatcgtctggccggatgggtcacggccgacgaaaaagagttggaaaaagacattcgcaaa
gtgaccggcggcgacgtgtctgtcgaaacgctgcaactggcgcggcggcttttcgccaac
gcgatcgaaacgccgggcggcctcaaggttcagacgatccacgcattcgccgaacgtttg
ctgcaaaggtttccgctcgaagcgggcgtgccgcccgacttcaaaattctcgatgacgcc
gccgccggcgatctaaaggcgcgcgccatcgagcagacactgctcgacgccacgtccgag
cctgagacgccgctcggacgtgcgctcgacgtgatcgtgcgttatgcgacggatacgcag
ttcgacaagctgatcagcaatgccgtcgaggaacggcgttggctggacgtcgcgaaccgg
cgcgaggccaaagctggggcgacgctcgccgacgtcgcggagatcgaaaggcatctgcgt
cagagtctcggcgttcgcgcagcaattgcagttcgagagctgcacgaggaatgcgcgtac
gttctttccgaaagcgatctgcgggagctgaccgagcaccttgcgaccggcaaggcgagt
gataccggtcatgtgccgactctgcaatcggctgccgggctgacggatgcgccgcgccgc
ttcgaagcgctttccggatactttctcaccgcgaccggcgagccgcgcaaaacgctgatg
acgaaggcgcttgcgtcgtcgaaacccggcctcaacgatcgctgtcttgccgcgcagcag
cgtctcttcgcgctttctaaagaactgaaagctctgtcgctcgtcgaatcctcgatggcg
ctctacgtcgttgccggtatcatcctgcaccgctacacggaagcgcgccgcagcgcaggg
gcgctcgacttcgccgatctcatcctgaagacaaaatcgctgctcgaaggcgacggcggg
caagcgcaatgggtgctcttcaagctcgacggcggtctcgaccacatcctcgtcgacgaa
gcgcaggacaccagcccggagcaatgggacatcgtcaaagcgctggcgcacgaattcttt
atgggagcggccacgcgcgacggttcgcctcgtactgtcttcgccgtcggtgacgaaaag
cagtcgatctattccttccagggcgccgacccgaaaatgttcgccgacgcgggcatccgg
ttcgcggctcttgcgcgcgatgccgggctcatctggaagtcgatcgaactcacgatgtcg
ttccgcacggtgacgccggttctggcggccgtcgatgcggtgttcgccgacgccgcgaag
actccaggattgacggccggtggaccaccgccgaagcacaacgccattcggcttggccat
gcgggtctcgtcgaaatgtggccgactgaaaagcccgacgacctcaatgccgccgatccg
tgggcgccgctgtcggacacgagcgagcactcgcccgcaaaccggcttgccgaacgcatc
gcggacacgatcaaaggctggctcgatcgcggcgagcggctggagtcgcagggacgcgaa
atccgtgcaggcgatattctgatcctggtgcgcaagcgcaatccgttcgccgtgccgatg
gttgcagccttgaagcggcgcggcatcgcagtggcgggatcggatcgcatcgcgctgacc
gatcagatcgccgtgcaggatctcatggcgctcggagatttcctcatcctgcccgaagac
gatctggcgctcgcggccgtcctgaaaggtccgatctttggtttcgatgacgatgatctg
ctggcgattgcgccgggacgcaaaagcaagacgctttggtcggccctgctcgacagcacc
ggggtcaaacccgagtacagggacgcagcggagaccttgaagcgatggcgcgccaaggcc
gacttcacgccgccgttcgaattcttctcgagcgtgctcgatcgcgacggggcgcgcgag
aaaatgctgcgccgcctcgggccggaagccgccgatgtgatcgacgagtttctcgatctt
gcgttgagctacgatgacggcacgccgccgtccctcacgcagtttctcgccgagttgcgc
gccatcgcgccggaagtgaagcgcgacatggatcatggccgcgacgaagttcgcgtcatg
acggtgcacggagcgaaaggtctcgaagctccgatcgtgttccttcccgacacatgtacg
acggcgtccggagacctctcggctgcgagcctcgtccggctgtccggccttccgcggccc
gaccacattcctgagccgatcgtatggacggtcaaaggcacgtcgcggcttgaggccgtc
accatcgcgcggcgcggacgggaagcacgcgagcacgaggagcgaaatcgtctgctgtac
gtggccatgacgcgtgcgcgcgaccggctctacatcgcgggtttcgaaggcaagaaaggc
cgcgccgagtcctgctggtacgatgcgatttcggaagcgctcctccctgtcgcggaagag
atcgacgacaacggtaaaaaggtgtggcgcatcgaaacggcgcagaccgccgaactcgac
caatcgcgcggcgagaaaacgcgtcagctcgaaagcgaggagaggcctgccttcgcgtcg
gaacgtgcgcggccggaaccaaagctgtcggtgccactcgcaccgtcgcgtcttgagccc
tacgctcctgatgcggaaggcgagccgatcatgtctgccaaagccgatgccgccgccacg
tacgatgcgccgtcgccgctggctggaaacagcgagcatcgcttcctgcgcgggacgctg
acgcatgcactgttgcagcatcttccgtccgtggcagcgagcggccgcgaggcaatcgca
accgcgttcgtcgccaaacgcggcgccgtactgtcgcgaaaggcgcgcgacggcatcgtc
cgcgagacgctggctatcctgtcgtcggcggatttcgcgcccctgttcggccccaacagc
atggccgaggttccgatcgcggccgtcattccgcgccctagcggctcgggaccggcgctg
gacctctcgggccagatcgacaggctggccgtgaccgacgatgaggtcttgatcgtcgac
tacaaaaccaaccggccgccaccctcggaagtccgatttgtcgcgcccgcctatctctac
cagctagcggcctacaggctggcgctaggggagatttatccgggccgccgcgtcaaggcg
gcgctactctggacggatgggccgcgcctcatggaagttcccgccgatgtgctcgacggt
taccaatcacggctttgggacctcgatgtccagagtcttgacgcttcctga
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