Halapricum desulfuricans: HSR122_0475
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Entry
HSR122_0475 CDS
T07709
Symbol
cDC9
Name
(GenBank) ATP-dependent DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hds
Halapricum desulfuricans
Pathway
hds03030
DNA replication
hds03410
Base excision repair
hds03420
Nucleotide excision repair
hds03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hds00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HSR122_0475 (cDC9)
03410 Base excision repair
HSR122_0475 (cDC9)
03420 Nucleotide excision repair
HSR122_0475 (cDC9)
03430 Mismatch repair
HSR122_0475 (cDC9)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hds03032
]
HSR122_0475 (cDC9)
03400 DNA repair and recombination proteins [BR:
hds03400
]
HSR122_0475 (cDC9)
Enzymes [BR:
hds01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HSR122_0475 (cDC9)
6.5.1.6 DNA ligase (ATP or NAD+)
HSR122_0475 (cDC9)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
HSR122_0475 (cDC9)
DNA replication proteins [BR:
hds03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
HSR122_0475 (cDC9)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
HSR122_0475 (cDC9)
DNA repair and recombination proteins [BR:
hds03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
HSR122_0475 (cDC9)
NER (nucleotide excision repair)
Other NER factors
HSR122_0475 (cDC9)
MMR (mismatch excision repair)
Other MMR factors
HSR122_0475 (cDC9)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QSG07882
UniProt:
A0A897N4S3
LinkDB
All DBs
Position
complement(448963..450612)
Genome browser
AA seq
549 aa
AA seq
DB search
MDFAAFADRAAAIEAESADTVITERVGELLADAGSELPIVVRFLQGRMFPAHDSRTLDIG
PALCYEAIARAAGRNVAAEDVESRLADRGEIGAVAASYDFGGQQGLGAFTGSDDGGLTVA
EVDEDLRAVAAATGDGSRDTKRDLLFGLFNRSSPEEARYLARLVLGEMRIGVGGGTVRDA
IAGAFDVSVEAVERALQVTNDYGLVADIAREDGDDGLETLGLEIGRPVQAMLAQTGTVTG
ALEDWGTAAVEVKYDGARVQVHYDGESVRLFSRNMEEVTDPLPEVVAFLERELDAPAILD
GEVVAVDEDGDPLPFQEVLRRFRRKHDVARAREDVTVRLRAFDCLHADGADLLDAPLRDR
RDRLETVLGSGVSEWWLADDAEAIADIEAETLEAGHEGIMLKDPESTYSPGRRGKHWRKR
KPDVETLDLVVTGAEWGEGRRAELLGTFEVSVRTPDGYAPVGNVATGITDERLEALTERL
EPHVRSEDGVAVDLEPAVVFEVGYEELQASNTYDSGYALRFPRFLGVREDKAPEDADTLD
RVRRLADAQ
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atggacttcgccgcgttcgccgaccgggcagcagcgatcgaagccgaaagcgccgacacg
gtgatcaccgaacgcgtcggcgaactgctggccgacgccggctcggagttgccgatagtc
gtccgcttcctgcagggccggatgtttcccgctcacgactcccgaacgctcgatatcggg
cccgcgctgtgttacgaggcgatcgcccgggcggccgggcggaacgtcgccgccgaggac
gtcgaatcgagactcgccgaccgcggcgagatcggggccgtcgcggcaagctacgacttc
ggcggccagcaggggctgggggccttcaccggcagcgacgacggcgggctgaccgtcgcc
gaggtggacgaggacctccgtgcggtcgccgccgcgacgggcgacggcagccgggacacc
aagcgcgatctcctgttcgggctgttcaaccgttcgagccccgaggaggcgcgctatctc
gcgcggctcgtcctcggagagatgcggatcggcgtcggcggcgggacggtccgggacgcc
atcgccggggccttcgacgtgtcggtcgaggcggtcgagcgggcgctacaggtcaccaac
gactacgggctcgtcgccgacatcgcacgcgaggacggcgacgacgggctcgaaacactg
ggcctcgagatcggccggcccgtgcaggcgatgctcgcacagaccggaacggtcaccggc
gcgctggaggactgggggacggccgcggtcgaagtcaaatacgacggggcgcgcgtccag
gtacactacgacggcgagagcgtccggctgttctcgcgaaacatggaggaggtgaccgac
ccgcttccggaagtcgtcgccttcctcgaacgcgaactggacgctccggcgatcctcgac
ggcgaggtcgtcgcggtcgacgaggacggcgacccgctcccctttcaggaggtgcttcgg
cgcttccgccggaaacacgacgtcgccagggcccgcgaggacgtcacggttcgactgcgg
gcgttcgactgcctgcacgcagacggggcggacctgctcgacgcgccgctccgggaccgc
cgggatcggctcgaaacggtgctcgggtcgggagtctcggagtggtggctcgccgacgac
gccgaagcgatcgccgacatcgaggccgaaaccctggaggcgggtcacgaggggatcatg
ctcaaagaccccgaatcgacgtattcgccgggccgtcggggcaaacactggcgcaagcgc
aaacccgacgtggagacgctcgatctggtcgtgacgggcgcggagtggggcgaaggtcgc
cgcgcggaactgctcggcacgttcgaggtctcggttcgcacgcccgacggctacgcgccg
gtcggcaacgtcgcgacgggaatcaccgacgagcgactcgaagcgctgaccgagcgcctc
gaaccccacgttcgaagcgaggacggcgtcgcagtcgatctcgaacccgcggtcgtcttc
gaggtcggctacgaggagttgcaggcctcgaacacatacgactcgggctacgcactgcgg
ttcccccggtttctcggcgtccgcgaggacaaagcccccgaggacgccgacacgctcgat
cgcgtccggcgacttgccgacgcacagtag
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