KEGG   Herbiconiux sp. SALV-R1: HL652_15460
Entry
HL652_15460       CDS       T06594                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
hea  Herbiconiux sp. SALV-R1
Pathway
hea03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:hea00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HL652_15460
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:hea03400]
    HL652_15460
Enzymes [BR:hea01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HL652_15460
DNA repair and recombination proteins [BR:hea03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HL652_15460
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C DNA_primase_S RNA_ligase DGF-1_C
Other DBs
NCBI-ProteinID: QJU54873
UniProt: A0A6M5IXC5
LinkDB
Position
3231631..3234318
AA seq 895 aa
MASKGTGSKDSPQTVTVGGHRLRITNLDKVLYPETGTTKADVLRYYAEIATTLIPHARNR
PATRKRWVHGVGTADEPGEVFFQKNLGEGTPEWVRRASIQHSDHANVYPLVNNQATLAWL
AQIAAIEIHVPQWRVDAHGRPKNPDRLVIDLDPGEGAGLPECVEVAKLARGILTDMGLDP
VPVTSGSKGIHLYAALDGRQSSDDVSAVAHELARALEADHTDLVVSDMKKALRTGKVLVD
WSQNNANKTTICPYSLRGRARPTVAVPRTWRELSSASLRQLELDEVLDRMKRRADPLAEA
AIAPGSIEEPGGRAGAGSDDPVDRRRDASAERAALARPTGDSHASADGNANTRDRLTVYR
SKRDGSKTPEPVPDDTPASTDGRSFVIQEHHASRLHWDFRLEHDGVLVSWALPKGVPTDA
GVNHLAVQTEDHPLEYGTFEGSIPKGEYGAGTVTIWDFGSYDLEKWRDGEEVIATLHGQP
TGGLGDPKRLALIHTGGKGGRSGDQWLIHLMKDQSPVDWDAEPGTPGGPPAKNASKRRSP
RRGTSDRAQSATSASGSSGACGTTAATAARPPKAMLATLAEQTPSGYVGIDDENDWAFEM
KWDGIRAIVQSHDGAVTLTTRNGNEVTAAYPELVQAVGEQLDGRDAVLDAEVVALDRSGR
PSFGRLQQRMGLSKPRDVERVQKEVRVDLMVFDLLRLDGDSLERRSYDERREALLELLPE
SAGAVHVPPAFDGDLAHALASSRELGLEGVLAKRRDSSYAPGRRSSLWLKIKHHLAQEVV
IVGWRPGKGRRAAQVGSLLMAVPDARGELRYAGRVGTGFSDRDLDDVSAKLARLERKTAP
LDDVPGVDARDAHWVTPKLVGEVEFAEWTGTGRLRQPSWRGWRTDKSPEDVVREG
NT seq 2688 nt   +upstreamnt  +downstreamnt
atggcctcgaaaggcacgggctcgaaggactctccgcagacggtcaccgtcggcggccac
cggctgcgcatcacgaacctcgacaaggtgctctaccccgagaccggcaccaccaaagcg
gatgtgctgcgctactacgccgagatcgccaccacgctcatccctcacgcccgcaaccgc
ccggcgacccgcaagcgctgggttcacggtgtgggtaccgccgacgagcccggcgaggtg
ttcttccagaagaacctcggcgagggcacgccggagtgggtgcgccgggcgagcatccag
cactccgaccacgcgaacgtctacccgctggtgaacaaccaggcgacgctggcctggctg
gcgcagatcgcggcgatcgagatccatgtgccgcagtggcgggtggatgcgcacggccgc
cccaagaaccccgaccggttggtgatcgacctcgaccctggcgagggcgcgggcctcccc
gagtgcgtggaggtggcgaagctcgcccgcggcatcctgactgacatggggctcgacccg
gttccggtgacgagcggctcgaagggcatccacctctacgcggccctcgacggccggcag
agctccgacgacgtctcggcggtcgcgcatgaactcgcccgggcactggaggccgaccac
accgacctcgtcgtctccgacatgaagaaggcgctccgcacgggcaaggtgctcgtcgac
tggagtcagaacaacgcgaacaagacgaccatctgcccgtactcgctgcgcgggcgggca
cggccgacggtcgcggtgccacgcacctggcgggagctgtcgtcggcgtcgctgcggcag
ctggagctcgacgaggtgctcgaccgcatgaagcggcgggccgacccgctcgcggaggct
gctatcgctcccggctcgatcgaagaacccggcgggcgcgctggagctggaagcgacgat
ccggtggatcgtcgccgcgacgccagcgccgagcgagctgcgctcgctcggccgacgggc
gactcgcacgccagcgccgacgggaacgccaacacccgcgaccgactcaccgtctaccgc
tccaagcgcgacggctcgaagacccccgagcccgtccccgacgacaccccggcctccacc
gacggccgctccttcgtcatccaggagcaccacgcctcccgtctgcactgggacttccgc
ctcgagcacgacggcgtgctcgtctcttgggccctgccgaagggcgtccccaccgacgcc
ggggtgaatcacctcgccgtgcagaccgaagaccatccattggagtacggcaccttcgag
gggtctattccgaaaggggaatacggcgcgggcacggtcaccatctgggacttcggcagc
tacgacctcgagaagtggcgcgacggcgaggaggtcatcgccaccctccacggccagccg
accgggggtcttggcgacccgaaacgcctcgcgctcatccacaccggcggcaagggcggc
aggtcgggcgaccagtggctcatccacctcatgaaagaccagtccccggtcgactgggat
gcggagcccggcaccccgggaggcccgccggcgaagaacgcgagcaagagacgcagcccc
cgccgcgggacctccgaccgcgcgcagtccgcaaccagcgcatccggctcgtcaggcgca
tgcggaacgaccgcagcgaccgccgcgcgcccgccgaaggccatgctcgccaccctcgcc
gagcagaccccctcgggctatgtcggcatcgacgacgagaacgactgggcgttcgagatg
aagtgggacggcatccgggcgatcgtgcagagccacgacggcgccgtcaccctcaccacc
cgcaacggcaacgaggtcaccgcggcgtaccccgagctggtgcaggcggtcggggagcag
ctcgacggccgagacgccgtgctcgacgccgaggtggtggccctcgaccgcagcggacgc
ccgagcttcggccgcctgcagcagcgcatggggctctcgaagccgcgcgacgtcgagcgc
gtccagaaagaggtgcgcgtcgacctcatggtgttcgacctgctgcgcctcgacggcgat
tcgctcgaacgccgcagctacgacgagcggcgcgaggcgctgctcgagctgctgcccgag
tcggcgggcgcggtgcacgtgccgcccgccttcgacggcgatctcgcccacgcgctcgcc
tcgagtcgcgagcttgggctcgagggggtgctggcgaagcggcgcgacagctcctatgcg
ccagggcgtcgctcgtcgctgtggctgaagatcaagcaccatctcgctcaagaggtggtg
atcgtgggctggcggcccggcaagggtcgccgggcggctcaggtgggctcgctgctcatg
gcggttccggatgcgcggggcgaattgcgctacgccggacgcgtgggtacggggttcagc
gatcgcgatctcgacgacgtctccgccaagctcgcccgactcgagcgcaagacggcaccg
ctcgacgacgtgcccggggtcgatgcgcgagacgcccactgggtgacgccgaagctcgtc
ggcgaggtcgagttcgctgagtggacaggaacgggccgcctgcgccagccctcctggcgc
ggctggcgcaccgacaagtcgccggaggacgtcgtgcgagaggggtga

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