Herbiconiux sp. SALV-R1: HL652_15460
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Entry
HL652_15460 CDS
T06594
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hea
Herbiconiux sp. SALV-R1
Pathway
hea03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HL652_15460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hea03400
]
HL652_15460
Enzymes [BR:
hea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HL652_15460
DNA repair and recombination proteins [BR:
hea03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HL652_15460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
DGF-1_C
Motif
Other DBs
NCBI-ProteinID:
QJU54873
UniProt:
A0A6M5IXC5
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All DBs
Position
3231631..3234318
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AA seq
895 aa
AA seq
DB search
MASKGTGSKDSPQTVTVGGHRLRITNLDKVLYPETGTTKADVLRYYAEIATTLIPHARNR
PATRKRWVHGVGTADEPGEVFFQKNLGEGTPEWVRRASIQHSDHANVYPLVNNQATLAWL
AQIAAIEIHVPQWRVDAHGRPKNPDRLVIDLDPGEGAGLPECVEVAKLARGILTDMGLDP
VPVTSGSKGIHLYAALDGRQSSDDVSAVAHELARALEADHTDLVVSDMKKALRTGKVLVD
WSQNNANKTTICPYSLRGRARPTVAVPRTWRELSSASLRQLELDEVLDRMKRRADPLAEA
AIAPGSIEEPGGRAGAGSDDPVDRRRDASAERAALARPTGDSHASADGNANTRDRLTVYR
SKRDGSKTPEPVPDDTPASTDGRSFVIQEHHASRLHWDFRLEHDGVLVSWALPKGVPTDA
GVNHLAVQTEDHPLEYGTFEGSIPKGEYGAGTVTIWDFGSYDLEKWRDGEEVIATLHGQP
TGGLGDPKRLALIHTGGKGGRSGDQWLIHLMKDQSPVDWDAEPGTPGGPPAKNASKRRSP
RRGTSDRAQSATSASGSSGACGTTAATAARPPKAMLATLAEQTPSGYVGIDDENDWAFEM
KWDGIRAIVQSHDGAVTLTTRNGNEVTAAYPELVQAVGEQLDGRDAVLDAEVVALDRSGR
PSFGRLQQRMGLSKPRDVERVQKEVRVDLMVFDLLRLDGDSLERRSYDERREALLELLPE
SAGAVHVPPAFDGDLAHALASSRELGLEGVLAKRRDSSYAPGRRSSLWLKIKHHLAQEVV
IVGWRPGKGRRAAQVGSLLMAVPDARGELRYAGRVGTGFSDRDLDDVSAKLARLERKTAP
LDDVPGVDARDAHWVTPKLVGEVEFAEWTGTGRLRQPSWRGWRTDKSPEDVVREG
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgaaaggcacgggctcgaaggactctccgcagacggtcaccgtcggcggccac
cggctgcgcatcacgaacctcgacaaggtgctctaccccgagaccggcaccaccaaagcg
gatgtgctgcgctactacgccgagatcgccaccacgctcatccctcacgcccgcaaccgc
ccggcgacccgcaagcgctgggttcacggtgtgggtaccgccgacgagcccggcgaggtg
ttcttccagaagaacctcggcgagggcacgccggagtgggtgcgccgggcgagcatccag
cactccgaccacgcgaacgtctacccgctggtgaacaaccaggcgacgctggcctggctg
gcgcagatcgcggcgatcgagatccatgtgccgcagtggcgggtggatgcgcacggccgc
cccaagaaccccgaccggttggtgatcgacctcgaccctggcgagggcgcgggcctcccc
gagtgcgtggaggtggcgaagctcgcccgcggcatcctgactgacatggggctcgacccg
gttccggtgacgagcggctcgaagggcatccacctctacgcggccctcgacggccggcag
agctccgacgacgtctcggcggtcgcgcatgaactcgcccgggcactggaggccgaccac
accgacctcgtcgtctccgacatgaagaaggcgctccgcacgggcaaggtgctcgtcgac
tggagtcagaacaacgcgaacaagacgaccatctgcccgtactcgctgcgcgggcgggca
cggccgacggtcgcggtgccacgcacctggcgggagctgtcgtcggcgtcgctgcggcag
ctggagctcgacgaggtgctcgaccgcatgaagcggcgggccgacccgctcgcggaggct
gctatcgctcccggctcgatcgaagaacccggcgggcgcgctggagctggaagcgacgat
ccggtggatcgtcgccgcgacgccagcgccgagcgagctgcgctcgctcggccgacgggc
gactcgcacgccagcgccgacgggaacgccaacacccgcgaccgactcaccgtctaccgc
tccaagcgcgacggctcgaagacccccgagcccgtccccgacgacaccccggcctccacc
gacggccgctccttcgtcatccaggagcaccacgcctcccgtctgcactgggacttccgc
ctcgagcacgacggcgtgctcgtctcttgggccctgccgaagggcgtccccaccgacgcc
ggggtgaatcacctcgccgtgcagaccgaagaccatccattggagtacggcaccttcgag
gggtctattccgaaaggggaatacggcgcgggcacggtcaccatctgggacttcggcagc
tacgacctcgagaagtggcgcgacggcgaggaggtcatcgccaccctccacggccagccg
accgggggtcttggcgacccgaaacgcctcgcgctcatccacaccggcggcaagggcggc
aggtcgggcgaccagtggctcatccacctcatgaaagaccagtccccggtcgactgggat
gcggagcccggcaccccgggaggcccgccggcgaagaacgcgagcaagagacgcagcccc
cgccgcgggacctccgaccgcgcgcagtccgcaaccagcgcatccggctcgtcaggcgca
tgcggaacgaccgcagcgaccgccgcgcgcccgccgaaggccatgctcgccaccctcgcc
gagcagaccccctcgggctatgtcggcatcgacgacgagaacgactgggcgttcgagatg
aagtgggacggcatccgggcgatcgtgcagagccacgacggcgccgtcaccctcaccacc
cgcaacggcaacgaggtcaccgcggcgtaccccgagctggtgcaggcggtcggggagcag
ctcgacggccgagacgccgtgctcgacgccgaggtggtggccctcgaccgcagcggacgc
ccgagcttcggccgcctgcagcagcgcatggggctctcgaagccgcgcgacgtcgagcgc
gtccagaaagaggtgcgcgtcgacctcatggtgttcgacctgctgcgcctcgacggcgat
tcgctcgaacgccgcagctacgacgagcggcgcgaggcgctgctcgagctgctgcccgag
tcggcgggcgcggtgcacgtgccgcccgccttcgacggcgatctcgcccacgcgctcgcc
tcgagtcgcgagcttgggctcgagggggtgctggcgaagcggcgcgacagctcctatgcg
ccagggcgtcgctcgtcgctgtggctgaagatcaagcaccatctcgctcaagaggtggtg
atcgtgggctggcggcccggcaagggtcgccgggcggctcaggtgggctcgctgctcatg
gcggttccggatgcgcggggcgaattgcgctacgccggacgcgtgggtacggggttcagc
gatcgcgatctcgacgacgtctccgccaagctcgcccgactcgagcgcaagacggcaccg
ctcgacgacgtgcccggggtcgatgcgcgagacgcccactgggtgacgccgaagctcgtc
ggcgaggtcgagttcgctgagtggacaggaacgggccgcctgcgccagccctcctggcgc
ggctggcgcaccgacaagtcgccggaggacgtcgtgcgagaggggtga
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