Candidatus Hoaglandella endobia: TPER_HE00468
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Entry
TPER_HE00468 CDS
T04484
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hed
Candidatus Hoaglandella endobia
Pathway
hed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPER_HE00468 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hed03021
]
TPER_HE00468 (rpoC)
03400 DNA repair and recombination proteins [BR:
hed03400
]
TPER_HE00468 (rpoC)
Enzymes [BR:
hed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPER_HE00468 (rpoC)
Transcription machinery [BR:
hed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TPER_HE00468 (rpoC)
DNA repair and recombination proteins [BR:
hed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TPER_HE00468 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
CUX97378
UniProt:
A0A143WUJ1
LinkDB
All DBs
Position
I:504500..508810
Genome browser
AA seq
1436 aa
AA seq
DB search
MFPPGVRAISTGNKERCLSVPSNSDRSQSVKDLIKFLKAQTKTEEFDAIKIALASPDMIR
SWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVE
VTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVVEGGI
TNLECRQILTEEQYLDALEEFGDEFEAKMGAEAIQTLLKNIDLKQECDQLREELEETNSE
TKRKKLTKRIKLLEAFVHSGNKPEWMIMTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRR
VINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRVITGSNKRPLKSLADMI
KGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLQMRDLA
TTIKAAKKMVEREEAVVWDILDEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHP
LVCAAYNADFDGDQMAVHVPLTLEAQLEARVLMMSTNNILSPANGEPIIVPSQDVVLGLY
YMTRDRVNCKGEGMVLTGPKEAERIYRSGVADLHARVKVRITEHDKCDNGKWVKNTHLVE
TTIGRAILWMIVPKGLPFSLVDQALGKKAISTMLNTCYRLLGLKSTVIFADQIMYTGFTY
AARSGSSVGIDDMVIPIKKAEIIDEAESEVAEIQEQFQSGLVTAGERYNKVIDIWAAANE
RVAKAMMDNLSTEAVFNRYGDEERQLSFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPD
GSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTE
DDCGTFAGIIMTPVIEGGDVKEPLREHILGRVTAENILQPGTEDILVERNTLLNEQLCDI
LEENSVDSVKVRSVVTCDTDFGVCVNCYGRDLARGHLVNKGEAIGVIAAQSIGEPGTQLT
MRTFHIGGAASRAAAESSIQVKNKGTIRLNNAKFVVNSSGKLVITSRNTELKLVDEFSRT
KESYRVPYGAIMDKGDGAETIGGEIVANWDPHTMPVITEVDGFIRFTDMIDGQTITRQTD
ELTGLSSIVVLDTAERTGSWKDLRPALRIVDKNGNNVLIPGTDIPAQYFLPGKTIIQLED
GAKITSGDTLARLPQETCGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKDTKG
KRRLIISPLNNSDDYEEMIPKWRQLNVFEGERVERGDVISDGQESPHDILRLRGVHAVTS
YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATITCSGGSDFLEGEQVEYSRIKIANRQ
LANEGKLKVNYVRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKFDELRGLKENV
IVGRLIPAGTGYAYHQERARNRQQNQAPTSHQITADEASANLAELLNAGLGGKLEN
NT seq
4311 nt
NT seq
+upstream
nt +downstream
nt
atgtttccgcctggggtgcgtgcgattagcactggtaataaagaaaggtgcctaagtgtt
ccttctaactccgacaggagccaatcggtgaaagatttaataaaatttctaaaagcgcaa
actaagactgaagagtttgatgcgatcaaaatagctctggcctcgcctgatatgattagg
tcatggtctttcggtgaagtaaaaaaaccagaaaccattaactatcgtacttttaagcct
gaacgcgacggtttgttctgcgcacgtatattcgggccagtaaaagattatgaatgcttg
tgtggtaagtataaacgtttaaaacatcgcggcgtaatctgcgaaaaatgtggtgttgaa
gttactcaaactaaagtacgccgtgaacgcatgggccatatagaactggcttcgcctaca
gcacatatctggtttttaaaatctcttccctcccgtattggcctgctgctagacatgcca
ctacgtgatattgagcgcgtgctatatttcgaatcctatgtagttgttgaaggtggaata
accaacctcgagtgccgtcaaatcttgactgaagagcagtatcttgacgccttggaagag
tttggtgacgaattcgaagctaaaatgggcgctgaagctattcagaccttattaaaaaac
atagacttaaaacaggaatgcgatcaactacgcgaagagctggaagaaaccaattctgaa
actaaacgtaaaaaattaaccaaacgcattaagttacttgaagcttttgtccattctggc
aacaagccagaatggatgattatgacggttttaccagtactacctcctgatctgcgtcct
ctggtaccactagacggtggtcgctttgcgacctctgatctaaatgatctgtatcgtcgc
gtgataaaccgtaataaccgtctgaaacggctgctagatctagccgcgccggatatcata
gtacgtaacgagaaacgtatgctacaggaagctgtcgatgccttgctagacaacggtcgt
cgcggacgcgtcattactggatcaaataagcggccgctgaaatctttagccgatatgatt
aaagggaagcagggccgtttccgtcaaaatctgttaggaaaacgcgtcgactactctggt
cgttcagttattaccgttggtccgtaccttcgtctgcatcaatgcggtctgccaaaaaaa
atggcgctggagctttttaaaccctttatctatggtaagttacaaatgcgtgatctcgct
actactatcaaagccgccaagaagatggttgaacgtgaggaagccgtggtctgggatatc
ctagacgaggtcattcgtgagcacccggttatgctgaaccgagcacctacactacataga
ctgggaattcaagcatttgagccggttctgatagaaggtaaagcgattcagcttcatccg
ctggtatgcgcggcttataatgctgacttcgacggtgaccagatggcggtgcacgttcca
ttgacgctagaggcccagttagaagcgcgtgttctgatgatgtctactaataacattcta
tccccagccaatggggagccgatcatcgtgccatcacaggatgttgtgttgggtctatat
tatatgacccgcgatcgtgttaactgcaagggcgaaggtatggtgctaaccgggccaaaa
gaagctgaacgcatttatcgttctggcgtggccgatctgcatgcacgcgttaaagtacgt
attactgagcatgataagtgcgataatggtaagtgggtaaagaacacgcatctggtagaa
acgactatcggccgtgctattctttggatgattgtcccaaagggactgccattttcgctg
gtagatcaggcgctaggtaagaaagcaatctccacaatgctgaatacttgctaccgcttg
cttggtctgaagtcgaccgtaatttttgctgatcagatcatgtacaccggatttacctac
gctgcccgttccggctcatcagtcggtatcgatgacatggtaatcccaatcaagaaagct
gaaattattgatgaagctgaatcagaagttgcagaaattcaagaacagttccagtcaggt
ctggtaactgcaggcgaacgttataacaaagtgatcgatatttgggctgcagctaacgag
cgtgtcgctaaggcaatgatggataatttatccacagaagccgtatttaaccgttacggc
gatgaagagcgtcaactgtcgtttaacagtatctttatgatggctgactccggtgctcgt
ggttcagcagcacagattcgccaattggccggtatgcgtggcctgatggctaaacctgac
ggctctattattgagacgccgattactgcgaatttccgtgaagggttaaacgtgttacag
tacttcatctccacacatggagcgcgtaaaggtttagctgatactgctcttaaaactgct
aactccggttatctaactcgccgtttagttgacgtagctcaggatttagtagtaactgaa
gatgactgcggaacctttgctggtatcattatgacgccagttatcgaaggtggtgatgta
aaagagccgcttcgcgaacacatattgggccgagttacggcagaaaatattttgcaacct
gggaccgaagatattttggttgagcgcaatacactactgaatgaacagttgtgtgatatc
cttgaagaaaattccgtagatagcgtcaaagttcgttctgttgtaacctgcgatacggat
ttcggtgtatgcgttaattgctatggccgagatttagctcgtggtcatttagttaataaa
ggcgaagctataggtgttatcgctgcacagtctattggtgaacccggcacgcaactgact
atgcgtaccttccacattggcggtgccgcgtcccgtgcagctgcagaatcaagtattcag
gtaaaaaacaaaggcactattcgtttgaataacgctaagttcgttgtcaacagcagcggt
aaactagtaattacctcacgtaataccgaattaaagcttgtcgatgaatttagccgtact
aaggaaagctatagggtgccctacggggccatcatggacaaaggtgacggtgcggagacc
ataggaggggaaatagttgccaactgggatccacacaccatgccggttattaccgaggtt
gatggttttatccgttttaccgatatgatagatgggcaaactattacccgacagaccgat
gaacttacaggtttgtcttctattgtggtgcttgatactgctgaacgtactggcagttgg
aaagatttgcggccggcgctgcgtattgttgacaaaaacggtaataatgttttgatccca
ggtacggatataccagcacagtattttttgccaggcaaaactatcattcagttggaagat
ggggccaaaatcactagcggtgatacgctagcgcgtttgccgcaggaaacttgcggtacc
aaagatatcacaggtggtctgccgcgcgtagcagatctgttcgaagcacgtcgaccgaaa
gagccagcaattttagcggaaatcagtggtattatttcgtttggtaaagatactaaaggt
aagcggcgcctaattatctcgccgttgaacaacagtgatgattacgaagaaatgattccg
aaatggcgtcaactaaacgtattcgaaggagaacgcgttgaacggggtgatgtaatttct
gacggtcaagaatcgccacacgatattctacgtttgcgtggtgtgcatgcagttactagc
tatatcgtaaacgaagttcaggatgtctaccgtctgcaaggtgtaaagattaacgataaa
catatcgaagttatcgttcgtcagatgttacgtaaagctaccattacttgcagcggtggt
tcagattttctagaaggtgagcaggtagaatactctcgtatcaagattgctaatcgtcaa
ttagccaatgaaggcaagttaaaagtaaactatgtgcgcgatctgttaggtatcaccaaa
gcttcattagctactgagtcttttatctcagcagcttctttccaggaaactacacgcgtg
ctaaccgaagcagcagtagccggaaaatttgatgaactgcgtggtctaaaagagaacgtt
atcgttggccggttaattccggccggtacaggttacgcttatcatcaggaacgcgcccgt
aatcgtcagcagaatcaggccccaacctcgcatcagattaccgctgatgaagcctcagct
aacctggctgagctgctgaacgcaggtctgggcggtaaattagaaaattaa
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integrated database retrieval system
