Herbaspirillum sp. meg3: hmeg3_08520
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Entry
hmeg3_08520 CDS
T05024
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
hmeg3_08520 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hee03400
]
hmeg3_08520 (mfd)
Enzymes [BR:
hee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
hmeg3_08520 (mfd)
DNA repair and recombination proteins [BR:
hee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
hmeg3_08520 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
SNF2-rel_dom
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ASU38333
UniProt:
A0A223P884
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All DBs
Position
1874309..1877764
Genome browser
AA seq
1151 aa
AA seq
DB search
MSFDLKKILPKPGVRFVPPAVHGSADAYLLAQAAIALKADKRMLTVVVANATDAQRLLSE
IPWFQRDDGDGNTENKLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQNGQCDVLIV
PATTALLRMAPPGFLAAYTFFFKQGEKLDEARLKTQLTLAGYTHVTQVMSPGEYSVRGGL
IDIFPMGSALPYRLDLFGDTIETIRTFDADTQRSLYPVREVRLLPGREFPMDETSRTAFR
SRWREVFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFDETATLFRYLPDNTLFATVGDID
QAIKRFWSDTRSRHNFLKADRERPVLPPEQVFLTDEDFFTLVKPYGRLALQTDDAPSDLS
APIPNIAVNRRSEDPLINLRAYLLKTGKRVMLCAESNGRRETLQQYFKEYDLHPALCDGY
ESFIANNEPLMLGVAPLHAGFELVDAEVSFITETELYAGSGRRVGRKKQEAVTQVEHMVR
DLSELKIGDPVVHANHGIGRYMGLLSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRY
SGASPDDAPLHSLGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSARDYET
FAESFGFEETPDQAAAINAVIGDMTSGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQV
AILAPTTLLAEQHAQTFADRFANWPVRIAELSRFRSGKEITQAIKGMGDGTLDIVIGTHK
LLSDDIKFSRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRD
FSIIATAPQKRLAIKTFVRAEGESTIREACLRELKRGGQVYFLHNEVDTIENRKAMLEAL
LPEARVVIAHGQMHERDLEKVMRDFVAQRSNILLCTTIIETGIDVPTANTIIMHRADKFG
LAQLHQLRGRVGRSHHQAYAYLLVNDVKGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEI
RGAGEVLGDNQSGEMHEIGFQMYSDMLNEAVRSLKNGKEPDLAAPLASTTEINLHVPALL
PSDYCGDVHERLSLYKRFANCTSQETIDGLQEELIDRFGKLPEVAKALVETHRLRIAAKP
LGIIKIDAHAESALLQFVPNPPVDAMRIIELIQKNRHIKLNGQDKLRITANMPDLNARVN
QIKATMRSLVG
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgacctgaaaaaaattcttcccaagccgggcgtgcgtttcgttcctcctgcc
gtgcatggctccgccgacgcctatttgctggcgcaggctgccattgcgctgaaggctgac
aagcgcatgctgaccgtggtggtcgccaatgccaccgatgcacagcggttactgtccgaa
ataccgtggtttcagcgtgatgacggagacggcaataccgagaacaaattgcgttgccat
ttgttgcccgactgggaaaccttgccttacgacgcattttcgccgcaccaggatctggtg
tccgagcgtctggccactttgtatgaagtacaaaacggacagtgcgacgtcctgatcgta
cccgccacgacagccttattgcgcatggcgccaccgggttttctggcggcttacaccttc
ttcttcaagcaaggcgagaagcttgatgaagcgcgcctgaaaacgcaactcacgctggcc
ggctacacccacgtcacgcaagtcatgtcgccgggtgaatattcggtgcgcggcggcttg
attgatattttcccgatgggttctgccttgccgtatcgcctcgacctgttcggcgacacc
atcgaaaccatccgcacctttgacgccgatacccagcgctcgctgtatcccgtgcgcgag
gtgcgcttgctgccaggacgcgagtttccgatggacgaaacctcgcgcacggccttccgc
agccgctggcgcgaagtgttcgaaggcgacccgtcgcgctcggccatctacaaggacatc
ggcaacggcatcgcctcggccggtatcgagtactacctgccactgttcttcgacgagacc
gcgacgctgttccgctatctgcctgacaacacgttgttcgccaccgtcggcgacatcgat
caggccatcaagcgcttctggagtgacacacgctcgcgccacaattttctcaaggccgac
cgcgaacgtccggtgctgccgcccgaacaggtttttctgaccgatgaagatttcttcacg
ctagtcaaaccgtacggccgcctggcgctgcaaacggacgatgcaccctcggatttgtcg
gcaccgataccgaatatcgccgtcaatcgccgcagcgaagatccgctgatcaatctgcgt
gcctatctgctcaaaaccggcaagcgtgtcatgctctgcgccgaatcgaacggccgtcgc
gaaaccctgcagcaatatttcaaagaatacgatctgcatccggcgctgtgcgatggctat
gaaagcttcatcgccaataatgagcccttgatgctgggtgtagcgccgctgcatgccggc
ttcgagctggtcgacgcggaagtcagcttcatcaccgagaccgaactctacgccgggtca
ggccgacgtgtgggccgcaagaagcaagaggccgtcacgcaggtcgagcacatggtgcgc
gatctgtcggagttgaagattggggaccccgtcgtgcacgccaatcacggcatcggccgt
tacatgggtttgctcagtatggacctgggtgagggcgagactgaattcctgcatctcgaa
tacgccaaggaaaccaaactttatgtcccggtatcgcaactgcatgtgatttcgcgctac
tccggtgcctctccggatgacgcgccactgcattcgctcggatcaggacaatgggaaaaa
gccaagcgcaaggcggcgcagcaggtgcgcgataccgctgctgaattgctgaatctgtat
gcacgccgtgccttgcgccaaggccatgccttccagtattcggcacgtgactacgaaacc
ttcgccgagagcttcggctttgaagaaacacccgatcaggccgccgccatcaacgccgtc
atcggcgacatgaccagcggcaagccgatggatcgcctgatttgcggcgacgtcggtttc
ggtaaaacagaggttgccttgcgcgccgcctttgtggccgtgatgggtggcaagcaggtc
gcgattctcgcgccgacgaccttgttggccgaacagcacgcgcagaccttcgccgatcgc
ttcgccaactggccggtacgcatcgctgagttgtcgcgtttccgcagcggcaaagagatc
acgcaagcgatcaagggcatgggcgacggcacgctcgatattgttatcggtacgcataaa
ttgctgtccgacgacatcaagttttcacgccttggcctggtcatcatcgatgaagaacac
cgttttggcgtgcgccagaaggaagcattgaaagccttgcgcgcagaagtcgacgtgctc
acgctgaccgccacgccgatcccgcgtacgctgggtatggcgctggaaggtttgcgcgat
ttttccatcatcgccacagcgccgcaaaagcgtctggccatcaaaaccttcgtacgcgcc
gaaggcgaatcgacgatacgcgaggcctgtctgcgcgagttgaaacgtggcgggcaagtc
tacttcctgcacaacgaagtcgataccatcgaaaaccgcaaggccatgctggaagccttg
ctgccggaagcacgcgtagtcatcgcccacggtcagatgcatgagcgcgatctggaaaag
gtcatgcgcgatttcgttgcgcagcgctccaacattctgctgtgcacgacgattatcgag
acgggtatcgacgtaccgaccgccaataccatcatcatgcatcgcgccgataaattcggt
ctggcgcagctgcatcaattgcgtggccgcgtcggccgctcgcatcatcaggcttatgct
tacctgctggtcaatgacgtcaagggcctgaccaagcaggcgcagcgccgtcttgaggcg
atccagcagatggaagagctgggcagcggtttctacctcgccatgcatgatctggaaatc
cgcggcgccggcgaagtgctcggcgacaatcaatcgggcgagatgcacgagatcggtttt
cagatgtactccgacatgctcaacgaggccgtgcgttcgctcaagaacggcaaggaaccg
gatctcgccgcaccattggccagcacaacggaaatcaacttgcatgtaccggcattgctc
ccgagcgattattgcggtgacgtgcacgagcgtctgtcgttgtacaaacgtttcgccaat
tgcacctcgcaggaaaccatcgacggtctgcaggaagaactgatcgatcgcttcggcaag
ttgcctgaagtcgccaaggcgctggtcgaaacgcatcgcctgcgcatcgccgccaagcct
ttgggcatcatcaagatcgatgcgcatgccgaatcggcgttgctgcaatttgtgccgaat
ccgccggttgacgccatgcgcatcatcgaactgatccagaagaatcgccatatcaaactc
aacggccaggacaagttgcgtatcaccgccaacatgcctgacctcaatgcgcgtgtgaat
cagatcaaggcgaccatgcgctcgctggtaggatga
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