Herbiconiux sp. L3-i23: L3i23_23850
Help
Entry
L3i23_23850 CDS
T08550
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
heh
Herbiconiux sp. L3-i23
Pathway
heh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
heh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L3i23_23850 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
heh03400
]
L3i23_23850 (mfd)
Enzymes [BR:
heh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L3i23_23850 (mfd)
DNA repair and recombination proteins [BR:
heh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L3i23_23850 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
BDI23609
LinkDB
All DBs
Position
complement(2517721..2521311)
Genome browser
AA seq
1196 aa
AA seq
DB search
MLPRLVRVSLQGMTRALTRAESFATAARAIGRDADFSATPGLQPPLLAALLQARVAAGKP
AVLFTVSPTGRESEALRVALGCLLPDAEILDFPAWETLPHERLSPSAETVGHRIHALRRL
RDWNGERPLIVSSSVRAALQPIAQGLVDHDPIVLASGVRGISLTEVSSTLPKLAYARVDM
VTRRGEFAVRGGILDVFPPVAEHPVRVDFFGDEVDSIRQFSVADQRSIEGEVAEVELPPS
RELLLDEQVRQRAAEMQHEFPSLAGMLAKIAEGIPVEGMESLSPALVDRLVPVTSYLPPG
SAVAIVQPERVASRAVDLAETNREFLDAAWSAATAGAAAPIDLASGDYMTVNQLRAAAGD
RAWWTLSTFEAMPDDDASAVEMAEYQRVRGDAVPAVQGGALEHVASLLSQGWSLAIAAGG
QGLVERSRDLLSDRELAGRMVDEFPADPEPGVAYLVKGAIDVGFEQPEAKLALISEREFF
GRSAGYDGRQVKKLASRRKNVVDPLQLKAGDYVVHQTHGIGRFVELVSREVSSGGRNAVK
SSREFLLIEYAPSKRGYPGDKLYVPTDQLDLLTRYVGGEAPQLSKMGGSDWAAAKGRARK
AVRDIAVELVKLYSARMASKGHSFPPDTPWQRELEEAFPYAETPDQLTTIDEVKADMERP
IPMDRLLAGDVGFGKTEVAVRAAFKAIQDGKQVAMLVPTTLLVRQHLETFTERFAGFPVK
VRALSRFQSAKEAKEIAKGLEDGTIDMVIGTHRILTDAISFKDVGLVIIDEEQRFGVEHK
DALKKLKTNVDLLAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVGPYSDKQVG
AAIRRELLREGQVFYVHNRVSSINRIAAQIAEMVPEARVAVAHGQMNEHTLEQVIVDFWE
RKFDVLVSTTIIETGLDIPNANTLIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLWDET
KPLSETAHDRLSTIAANNDLGSGIQVALKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRMI
GEAVSDFRGDVAEGQTELRLELPVDARIPETYVDSERLRLEAYQKLSAASAPKADDGALE
SVLEELTDRYGEPPAEVLALMSVSRLRRLAQKAGLSEVVIVGPNLRVSPAELADSRQIRL
QRMYPKSRILQQSGTALIPVPVINGEPPADEDLIGWVRDLLEAIFVTEQAPKVAAG
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
gtgctgcctagactcgtgcgagtgagtttgcaggggatgacgcgcgccctgacgcgcgca
gaatcgttcgccaccgctgcccgcgccatcgggcgcgacgccgacttctcggcgacgccg
gggctgcaaccgccactgctggccgccctcctccaggcgcgcgtcgccgcgggcaagccc
gccgtgctgttcaccgtgtcgcccaccggacgcgagtccgaagcgctccgagtggcgctc
ggctgcctgctgccggacgccgagatcctcgacttcccggcctgggagacgctgccgcac
gagcgtctcagcccgtcggccgagaccgtcggacatcgcatccacgccctccgacgcctg
cgcgactggaacggcgagcggcccctcatcgtctcgagctccgtccgcgccgccctgcag
ccgatcgcgcagggtctcgtcgaccacgaccccatcgtgctggcgagcggtgtgcgcggg
atctcgctgaccgaggtctcctcgaccctgccgaagctcgcctacgcccgcgtcgacatg
gtgacccgccgcggcgagttcgcggtgcgcggcggcatcctcgacgtcttcccgcccgtc
gccgagcacccggtgcgcgtcgacttcttcggcgacgaggtcgacagcatccggcagttc
tcggtcgccgatcagcgctccatcgagggcgaggtcgccgaggtcgagctgccgccgagc
cgagagctgctgctcgacgagcaggtgcgccagcgcgccgccgagatgcagcacgagttc
ccctcgctcgccggcatgctggcgaagatcgccgagggcatccctgtcgagggcatggag
tcgctcagccccgcgctcgtcgaccggctcgtgccggtcacctcgtatctgccgccggga
tccgcggtcgcgatcgtgcagcccgagcgggtcgccagccgtgccgtcgatctcgccgag
acgaaccgcgagttcctcgacgccgcgtggagtgcggccaccgccggagccgcggccccc
atcgacctcgccagcggcgactacatgaccgtcaaccagctgcgcgccgccgcaggcgac
cgggcctggtggactctgtcgaccttcgaggcgatgcccgacgacgacgcgtcggccgtc
gagatggccgagtaccagcgggtgcgcggcgacgcggtgcccgccgtccagggcggagcg
ctcgagcacgtcgcttcgctgctgtcgcagggatggagcctcgcgatcgccgcgggcggg
cagggcctcgtcgaacgcagccgcgatctgctctccgaccgcgaactcgcggggcgcatg
gtcgacgagttccccgccgaccccgagccgggcgtcgcctacctcgtgaagggcgcgatc
gacgtcggcttcgagcagcccgaggcgaagctcgccctcatcagcgaacgcgagttcttc
ggccgcagcgccggatacgacggtcgccaggtcaagaagctggcgagccgccgcaagaac
gtcgtcgacccgctgcaactgaaggccggcgactacgtcgtgcaccagacccacggcatc
ggccggttcgtcgagctcgtctcacgcgaggtgagctctggcggccgcaacgcggtgaag
tcgagccgcgagttcctcctcatcgagtacgcgcccagtaagcgcggctacccgggcgac
aagctctacgtgcccaccgaccagctcgacctgctcacgaggtacgtcggcggcgaggcg
ccgcagctgtcgaagatgggcggcagcgattgggccgccgcgaagggacgcgcccgcaag
gcggtccgtgacatcgccgtcgagctcgtcaagctctactcggcgcgcatggcgtcgaag
gggcattcgttcccacccgacaccccgtggcagcgcgaactcgaagaggcgttcccctac
gccgagacccccgaccagctgacgacgatcgacgaggtcaaggccgacatggagcggccc
atcccgatggaccgcctgctcgcgggcgacgtcggtttcggcaagaccgaggtcgctgtc
cgcgccgcgttcaaggcgatccaggacggcaagcaggtcgcgatgctcgtccccacgacc
ctgctggtgcgccagcacctcgagaccttcaccgaacgcttcgccgggttcccggtgaag
gtccgcgccctcagccggttccagagcgcgaaggaggcgaaggagatcgcgaagggccta
gaagacggcaccatcgacatggtgatcggcacgcatcgcatcctcaccgatgcgatctcg
ttcaaggacgtcggcctcgtcatcatcgacgaggagcagcgtttcggcgtcgagcataag
gacgccctcaagaagctcaagaccaacgtcgacctgctcgcgatgagcgcgacgccgatc
ccgcgcaccctcgagatggcggtcaccggcatccgcgagatgtcgaccctcgcgaccccg
cccgaggaccggcaccccatcctcaccttcgtgggcccctactccgacaagcaggtgggg
gctgcgatccgccgcgagctgctgcgcgaaggccaggtcttctacgtgcacaaccgggtg
tcgagcatcaaccgcatcgcagcgcagatcgccgagatggtgcccgaggcccgcgtcgcc
gtcgcgcacgggcagatgaacgagcacacgctcgagcaggtcatcgtcgacttctgggag
cgcaagttcgacgtgctcgtctcgacgacgatcatcgagaccggcctcgacatccccaac
gcgaacacactcatcatcgaccgggccgacaagtacggcctcagccagctgcaccagttg
cgcggtcgtgtcgggcgtgggcgcgagcgtgcctacgcctacttcctctgggacgagacg
aagccgctgtccgagaccgcgcacgaccgtctgtcgaccatcgccgcgaacaacgacctc
ggctccggcatccaggtggcgttgaaggatctcgagatccgcggcgcgggcaacctgctc
ggcggcgagcagtccggtcacatcgccggggtcggcttcgacctctacctgcggatgatc
ggcgaggccgtcagcgacttccgcggcgatgtcgccgaggggcagaccgagctgcggctc
gagctgcccgtcgatgcacgcatccccgagacgtacgtcgacagcgagcggctgcggctc
gaggcctaccagaagctgtcggcggcgagcgcgccgaaggccgacgacggtgcgctcgag
tcggtgctcgaggagctcaccgaccggtacggcgagcctcccgccgaggtgctcgcgctg
atgtccgtctcgcggctgcggcggctcgctcagaaggcggggctgtcggaggtcgtcatc
gtggggcccaacctgcgggtctcgccagccgagctggccgactcgcggcagatccgtctg
cagcgcatgtatccgaagtcgcgcatcctgcagcagagcggaacggcgctgatcccggtg
cccgtcatcaacggggagccgcccgccgacgaggatctgatcgggtgggtccgcgacctg
ctcgaggcgatcttcgtgaccgagcaggccccgaaggtcgccgccggctga
DBGET
integrated database retrieval system
