Herbiconiux sp. L3-i23: L3i23_24300
Help
Entry
L3i23_24300 CDS
T08550
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
heh
Herbiconiux sp. L3-i23
Brite
KEGG Orthology (KO) [BR:
heh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
heh03019
]
L3i23_24300 (hrpA)
Enzymes [BR:
heh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
L3i23_24300 (hrpA)
Messenger RNA biogenesis [BR:
heh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
L3i23_24300 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
T2SSE
SLFN-g3_helicase
ResIII
nSTAND3
DUF2017
FtsK_SpoIIIE
NACHT
Zeta_toxin
Herpes_ori_bp
Motif
Other DBs
NCBI-ProteinID:
BDI23654
LinkDB
All DBs
Position
2568748..2572629
Genome browser
AA seq
1293 aa
AA seq
DB search
MAELRISYPPELPVSGMRGEIADAIRDNQVVIVAGATGSGKTTQLPKILLELGRTSIAHT
QPRRLAARTIAERIADELDVEMGGLVGYQVRFTDRASDATRIKLMTDGILLNELTRDRDL
KRYDAIIIDEAHERSLTIDFLLGYLKRLLPRRPDLKVVITSATIDPESFARHFADANGDP
APIIEVSGRTYPVEIRYRPLVAESSGDDDEGASAEDLDLLSGIRAGLTELEREAPGDVLV
FLSGENEIRDAQDALKGLPATEVLPLYGRLSSADQHRVFERSTTPAIRRRVILATNVAET
SLTVPGIKYVIDAGTARISRYGARSKVQRLPIEAISQASANQRSGRAGRTSDGIAIRLYS
EDDFDKRPAFTDPEILRTSLAAVILQMLTLGLGEITEFPFLQPPDARGVKDGLDLLRELG
AVRADGSVTRIGRDMSRLPVDPRFARMLIESKKHGVTREVLAIVAGMSIQDPRERPLERR
AQAGEAHARFADPTSDFLTLLALWNHLEQKQRELSSSAFRRLCKSEYLNYLRVREWADVS
SQLRRLAKPLGLTIGEPRADPDGVHRSILAGLLSQIGVLDERTAPPTGRAAGGERRGKDA
RSAEYIGARQVRFAIFPGSSLGKKRPTAVMAAELVETSRLFARSAAAIDPAWAEQLAGDL
VKRSHSEPHWEAKQGAAVGWERVTLFGVPLVARRRIQWARIDSGLARELFIRHALVGGEW
PPHLDRSRDRAFDFDRANARLRRELEAAEERTRRRDILVDDEAVVDFYDDRIPADVVSVR
TFETWWSAERRTRPDLLTLRRSDLLDEEDASPTDEAAYPPRFRQGDQSLRLRYRFEPGAD
DDGVTVQIPLALLPRLTPDGFDWLVPGFRHELVTALIKTLPKAIRRTVVPAADWASKLMA
ELPDDGVGSLTTLLADRIRRATGASATADDFDTERLPAHLRMGFAVLDENGRRLGSGKSL
EALQHRFADQARDSVARVFASARDGLERRRGAPAPGSPAPKETVSIERSGITVWDFEELP
RSLEVRRGGGSVRAYPALVDERDSVAIRLFSTAEEQAAAHRLGVLRLLQLATPSPASYLN
DHLTGAEKLSLATSPYRDTKTLFADAMTAVLDQAVRRRAPDGLLWSKSEFEATRDAVAGT
VIDDLFTAVALVARTLAAAREAEVAVKDATTLALLPALTDIRAQIAALVFPGFVSSTGIA
RLARLPVYLTGAAHRVAKLRENPNRDRVWMNEVQTATERYLAAGGTLPLEAVAPAHLAEA
RWMLEELRLSLFAQQLGAAGPVSIQRITKVLAG
NT seq
3882 nt
NT seq
+upstream
nt +downstream
nt
atggccgaactccgtatctcgtatccgcccgagctgccggtcagcgggatgcgcggagag
atcgccgacgcgatccgcgacaaccaggtcgtcatcgtcgccggcgcgaccggttcgggt
aagacgacgcagctgccgaagatcctcctcgaactcggccgcacctccatcgcgcacacc
cagccccggcggctcgccgcgcgcaccatcgccgaacgcatcgccgacgaactcgacgtc
gagatggggggcctcgtcggctaccaggtgcgcttcaccgaccgcgcgagcgacgcgacc
cgcatcaaactgatgaccgacgggatcctgctcaacgagctcacccgcgaccgcgacctg
aagcgctacgacgcgatcatcatcgacgaggcccacgagcgcagcctcaccatcgacttc
ctgctcggctacctgaagcgtctcctcccccgccgccccgacctgaaggtcgtcatcacg
agcgcgacgatcgaccccgagagcttcgcccggcacttcgccgacgcgaacggcgacccg
gcgcccatcatcgaggtcagcggccgcacctacccggtcgagatccgctaccgccccctc
gtcgcagagtcgagcggggacgacgatgaaggcgcgagcgcagaagacctcgacctgctg
agcggcatccgagcaggtctcaccgagctcgaacgcgaggcgccgggcgacgtgctcgtc
ttcctctcgggcgagaacgagatccgcgatgcgcaggatgctctgaaaggtctgccggcg
accgaggtactgcccctctacggccgactctcctccgccgaccagcaccgcgtcttcgaa
cggagcaccacgccggcgatccgccgccgcgtgatcctcgccacgaacgtggccgagacg
agcctcacggtgcccggcatcaagtacgtcatcgacgccggaaccgcccgcatctcccgc
tacggcgcccgcagcaaggtgcagcgtctgccgatcgaggcgatctcgcaggcctccgcc
aatcaacgctccggccgcgccggccgaacgagcgacggcatcgccatccgcctctactcc
gaggacgacttcgacaagcgtcccgccttcaccgaccccgagatcctgcgcaccagcctt
gcggccgtcatcctgcagatgctcaccctcgggctcggtgagatcaccgagttcccgttc
ctgcagccgcccgacgcccgcggagtcaaggacggtctcgacctgctgcgcgagctcggc
gcggtgcgcgccgacggcagcgtcacccgcatcggccgcgacatgtcgcgcctccccgtc
gatccacgcttcgcccggatgctgatcgagtcgaagaagcacggtgtgacccgcgaggtg
ctcgcgatcgtcgccgggatgagcatccaggatccccgcgagcgccccctcgaacggcgc
gctcaggccggcgaggcgcacgcccgcttcgccgacccgacgagcgacttcctcaccctc
ctcgcactgtggaaccacctggagcagaagcagcgcgaactgtcctcgagcgcgttccgg
cgactctgcaagtccgagtacctcaactacctgcgggtgcgcgagtgggccgacgtgtcg
tcgcagctgcgccgcctagcgaaaccgctcggcctgacgatcggcgagccgagggccgac
cccgacggggtgcaccgctcgatcctcgccgggctgctctcgcagatcggtgtcctcgac
gagcgcaccgccccgccgaccggacgagcagccggcggcgagcgccgcggcaaggacgcg
agatctgcggagtacatcggcgcccggcaggtgcgcttcgcgatcttccccggatcctcc
ctcggcaagaagcgccccaccgcggtgatggcggcggagctcgtcgagacctcccgtctc
ttcgcccgctcggcggctgccatcgatcccgcctgggccgaacagctggccggcgacctg
gtcaagcgctcgcacagcgagccgcactgggaggcgaagcagggggcagcggtcggctgg
gagcgggtgacgctcttcggggttcccctcgtcgcccgccgccgtatccagtgggcgcgt
atcgactcggggctcgcacgcgagctgttcatccggcacgccctcgtcggcggcgagtgg
ccgccgcacctcgaccgatcgcgcgaccgcgccttcgacttcgaccgggccaacgcccga
ctgcgccgcgaactcgaggccgcagaggagcgcacccgccgccgcgacatcctcgtcgat
gacgaagccgtcgtcgacttctacgacgaccgtatcccggccgacgtggtctcggtgcgc
acgttcgagacctggtggagcgccgagcgcaggacccgccccgacctcctcaccctgcgc
cgctccgatctgctcgacgaggaggacgcgagtccgaccgacgaggccgcctatcccccg
cgattccgtcagggcgatcagtcgctgcggctgcgctaccgattcgagcccggcgccgac
gacgacggggtgacggtgcagatcccgctcgccctgctcccccgtctcacgccggacggc
ttcgactggctggtacccggattccgtcacgagctcgtgaccgcgctcatcaagacactg
ccgaaggcgatccgccgcaccgtggtgcccgccgccgactgggcgtcgaagctgatggcc
gagctgccggacgacggggtggggtcgttgacgacgctgctggccgaccgcatccggcga
gcgacgggcgcctccgcgaccgccgacgacttcgacacggagcggctgcccgcccacctg
cggatggggttcgccgtgctcgacgagaacggtcgacgcctcggttccggcaagagtctc
gaggcgctgcagcatcgcttcgccgatcaggcccgagactcggtcgcgcgggtgttcgcc
tcggctcgcgacggcctggagcgccgccgcggcgctccggcccccggctcacccgcgccg
aaggagacggtgtcgatcgagcgctccggcatcaccgtgtgggacttcgaggagcttccc
cgctcgctcgaggtgcgacggggcggcggcagcgtgcgcgcttaccctgcgctcgtcgac
gaacgggattccgtcgcgatccgtctcttcagcactgcggaggagcaggccgccgcccac
cgcctcggcgtgctgcgtctgctgcagctggccaccccgtcgccggcgtcgtacctcaac
gatcacctcaccggggccgagaagctgagcctcgcgacgagtccttaccgcgacaccaag
accctcttcgccgacgcgatgaccgccgtgctcgatcaggcggtgcgccgccgcgccccc
gacggcctgctgtggtcgaagtccgagttcgaggcgacgcgcgacgcggtcgccggcacc
gtgatcgacgacctcttcaccgcggtcgccctcgtggcgcgcaccctcgccgcggcccgg
gaggccgaggtggcggtgaaggatgccaccacgctcgccctgctaccggccctcaccgac
atccgcgcgcagatcgccgcgctcgtcttcccaggcttcgtctcgtcgacgggcatcgcg
cgcctcgcccgactccccgtctacctgaccggcgccgcacaccgcgtcgccaagctgcgt
gagaacccgaaccgcgaccgggtctggatgaacgaggtgcagaccgcgacggagcgatac
ctcgccgccggcggaacgctgccgctcgaggccgttgcacccgcccacctcgccgaggcc
cggtggatgctcgaagagctccgactcagcctcttcgcacagcaactcggggcagcgggt
cccgtgtcgatccaacgcatcacgaaggtgctcgcgggttga
DBGET
integrated database retrieval system
