Helicobacter pylori UM298: K748_04470
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Entry
K748_04470 CDS
T02757
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hem
Helicobacter pylori UM298
Pathway
hem03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K748_04470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hem03400
]
K748_04470
Enzymes [BR:
hem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K748_04470
DNA repair and recombination proteins [BR:
hem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
K748_04470
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
PAC_bac
Motif
Other DBs
NCBI-ProteinID:
AGR62637
LinkDB
All DBs
Position
complement(613394..616393)
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSSLYGALNKGFDYQILACKDFKESELAKEVISYFKPNTKVILFPEFRAKKNDDLRSF
FEEFLQLLGGLREFYQALENKQEAIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLK
DKLFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDTECESIKEFDPTTQMSL
KEDLLEIEIPPTLFSLNEQSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKTHDLLHAYK
SVISPKALEEIQELASLNELDGERFKFLKVLENPQGYEDLEIHAHALESFIALHSNRKIT
LLAPNKTILDNAISVLEKSHIECVIAPFVLNFKTPDGIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYWGEDKLLLPVENLHLIARYVAQS
DSVPIKDRLGKGNFLKLKAKVKTKLLEIAGKIIELAAERNLILGKKMDTHLAELEIFKSH
AGFEYTSDQEKAIAEILKDLSSKRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYASEKNKLLKAVELGLIDVLVGTHAILGAKF
KNLGLVVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKIPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKTKLEDLIPKLKIAI
LHSQINAHESEETMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELGGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSLCENTDEVGQIHEEIEDRFGKIDDLSAQFLQIITLKILANQLGIIKLSNFNQNI
TITYSDEKKESLKAPSKDDNDILETLLKHLRTQISLKRH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctagcctttatggagccttaaacaaaggctttgattatcaaatactcgct
tgtaaggattttaaagagtccgagctcgctaaagaagtcataagctattttaagccaaat
accaaagtcattcttttcccggagtttagggctaaaaaaaacgacgatttgcgttcgttt
tttgaagaatttttacagcttttagggggtttaagggagttttatcaagccttagaaaac
aagcaggaagcgatcatcattgcccctattagcgcgttattgcaccctttgcctaaaaaa
gaacttttagaaagctttaaaatcactcttttagaaaaatataaccttaaggatttaaaa
gacaagctcttttattatggttatgaaattttagacttagtggaagtggaaggcgaagcg
agctttaggggggatattgtggatatttatgcgcccaattctaaagcgtatcgcttgagt
ttttttgacacggagtgtgagagcattaaggaatttgaccctaccactcaaatgagtctc
aaagaagatttgttagaaattgaaatcccccccacgctttttagtttgaacgaacaatct
tataaggatctgaaaaccaaagtagagcaaagccccttaaatagcttttctaaagattta
accagttttggtttgtggtttttaggggaaaaaacacacgatttgttgcatgcctataaa
agcgttataagccctaaagctttggaagaaatccaagaattagcgagcttaaacgaattg
gatggtgagcgtttcaaatttttaaaggttttagaaaacccgcaaggctatgaagattta
gaaatccatgcacatgccctagaaagctttatagctttgcattcaaatcgtaaaatcacg
cttctagctcctaataaaacgatcttagacaatgcgataagcgtgcttgaaaaaagccat
attgaatgcgtcatcgccccctttgtgttaaattttaaaacccctgatgggatttttatt
tcactcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaatgaa
ttgaatgcgggcgaatgggtggtgcatgatgattatggggtgggcgtgttttcccaatta
gtccaacacagcgttttagggagcaagagggattttttagaaatcgcttattggggcgaa
gacaaactgctattaccggtagaaaatttgcatctaatcgctcgctatgtggcgcaaagc
gatagcgtgccaattaaagaccggctagggaaagggaatttcctcaaactgaaagctaaa
gttaaaaccaagcttttagagattgcaggcaagatcattgaattagcggctgaacgcaac
ttgatcttgggtaaaaagatggacacgcatttagcggagttggaaatttttaaatcgcat
gcggggtttgaatacacaagcgatcaagaaaaagccatcgctgaaattttaaaggattta
agctctaagagagtgatggacagattactgagtggggatgtgggttttgggaaaacagaa
gtggcgatgcatgcgattttttgcgcgtttttgaacggctttcaaagcgctctagtcgtg
cctactactttattagcgcaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggacaggtatgcgagcgaaaaaaacaagcttttaaaggcg
gtggaattagggctgattgatgttcttgtaggcacgcatgcgattttaggcgcgaaattt
aaaaacttgggcttagtggtggtggatgaagagcataaatttggcgtgaaacaaaaagaa
gctttaaaagaattgagtaaaagcgtgcattttttgagcatgtccgctacacctatcccg
cgcactttaaacatggcgctctctcaaattaaaggcatcagctctttaaaaatcccgccc
acagacagaaaacccagccgcacttttttgaaagaaaagaatgacgaactcttaaaagag
attattcatagagaattgcgccgtaacgggcaaattttttacatccataaccacatcgct
agcatttcaaaagtcaaaaccaagctagaagatttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgctcatgagagcgaagaaaccatgctagagtttgctaaggga
aactatcaggttttattatgcacttctattgtggaatcagggattcatttgcctaacgct
aacacgattattatagataacgcgcaaaattttgggctggctgatttgcaccaattaaga
gggcgtgtggggaggggcaaaaaagaaggcttttgctatttcctcatagaagatcaaaaa
agtttgaatgaacaggccctaaaacgtttgctcgctttagaaaaaaattcgtatttaggc
agtggggagagtatcgcttatcatgatttagaaattagggggggcgggaatttgctcggg
caagatcaaagcgggcatattaaaaatatcggttatgcgctctatacgcgcatgcttgaa
gacgcgatttatgaattgggtgggggtaaaaaaaggcttgaaaagagcgtagaaatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ctataccgccgtttgagtttgtgtgaaaatacagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaatagacgatttgagcgctcaatttttgcaaatcattacg
cttaaaattctagccaaccagcttggcatcattaaactttctaatttcaatcaaaacatc
accattacttatagcgatgaaaagaaagaaagcctaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttgcgcactcaaatttctttaaagcggcactaa
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