Helicobacter pylori Rif1: C695_08125
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Entry
C695_08125 CDS
T02317
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
her
Helicobacter pylori Rif1
Pathway
her00550
Peptidoglycan biosynthesis
her01100
Metabolic pathways
her01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
her00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
C695_08125
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
C695_08125
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
her01011
]
C695_08125
Enzymes [BR:
her01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
C695_08125
Peptidoglycan biosynthesis and degradation proteins [BR:
her01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
C695_08125
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
Motif
Other DBs
NCBI-ProteinID:
AFV44385
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All DBs
Position
complement(1647284..1649050)
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AA seq
588 aa
AA seq
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MKNLRYKLLLFVFIGFWGLLALNLFILSVKNQEYYEKLAERNMTKKEFLVPTRGNITDRN
DEFLATNELVFGVFLPSGLKQKDLLEKIEIIQKFFPNFSKETLLNNYQKENSLYNHNLIK
VVGFIPYATMQPLYAKLIQTQGIFALPLDKRYYPNNALASHVLGYVGVASLQDLKDDEEN
QYSQIVGKTGIEKEYNKLLQGKVGYKIMRVNALNQELATLEVVLPSTNNHLQLSLDKRLQ
KEADKLFENKRGAILVMDAENGELLVAGSYPEYNLNDFVGGISQDKWQKLQDDIYNPLLN
RFANALYPPGSVVKMGVGLSFLENLHITENTTIPTPPFIEVGKHKFRDWKKTGHGNSNLY
KAIRESVDVYFYKFGLEISIEKLSKTLREVGFGEKTGVDLPNEFVGIVPDNLWKLKRFNQ
DWRVGDTLITAIGQGSFLATPLQVLAYTGLIATGKLATPHFAINNKQPLKDPLNSFQKKK
LQALRVGMYEVCNHKDGTAYHSTRGSKITLACKTGTAQVVEIAQNIVNRMKEKDMEYFHR
SHAWITAFLPYEKPKYAITILVEHGEGGSKLGGLLVKMSNKLYELGYL
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaatcttcgctataagcttttgctctttgtttttatagggttttgggggttacta
gccttaaatttatttattttaagcgttaaaaatcaagaatactatgaaaaattggctgaa
cgaaacatgactaaaaaggaatttctagtccctacaaggggaaatattacagacagaaat
gatgagtttttggccactaatgaattggtgtttggcgtgtttttgcccagcggactgaaa
caaaaagatcttttagaaaaaattgaaatcatccaaaagtttttccctaacttttctaaa
gaaacgcttttaaacaattaccaaaaagaaaattcgctttataaccataacctcattaaa
gtggttggcttcattccttatgccaccatgcaacctctttatgccaaactcatccaaact
caaggcatttttgcgcttcccttagacaagcgttactaccctaataacgctttagcttcg
catgttttaggctatgtgggggtggcaagcttgcaagatttaaaagacgatgaggagaat
caatacagccagattgtaggcaaaaccggcattgaaaaagaatacaacaagcttttacaa
ggcaaggtgggttataaaatcatgcgtgtcaatgcgctcaatcaagaattagccacctta
gaagtagtgctgccaagcaccaacaaccacttgcaattgagtttagacaaacgcttgcaa
aaagaagcggacaagctctttgaaaataaaaggggggctattttagtgatggatgcagaa
aatggggaattgctcgttgcaggaagttaccctgaatacaatttgaacgattttgtaggc
gggatcagtcaagacaaatggcaaaaacttcaagatgatatttataaccccttattaaac
cgcttcgctaacgccttgtatccgccgggatctgtggttaaaatgggcgtgggcttgagc
tttttagaaaaccttcatatcacagaaaacaccaccatacccaccccgccttttattgaa
gtgggcaagcacaaattcagagactggaaaaaaacagggcatggcaattctaatttgtat
aaagccattagggagtccgtggatgtgtatttttataagtttgggcttgaaatctctata
gaaaaactctctaaaaccttaagggaagtgggctttggggaaaaaacgggcgttgatttg
ccgaatgaatttgtggggattgtgccggataatttgtggaaactcaaacgcttcaatcaa
gactggcgcgttggggacacgctcattaccgctattgggcaaggctcttttttagccacg
cccttgcaggttctagcctacacgggactcattgctacgggcaaactggcaacgcctcat
ttcgctatcaacaacaaacaaccgcttaaagatcccctaaatagctttcaaaaaaagaag
ctccaagccttgagagtgggcatgtatgaagtgtgtaaccataaagacggcaccgcttat
cattccacaaggggttctaagattactttagcgtgtaaaaccggcaccgcacaagtcgtg
gaaatcgctcaaaacatcgtcaatcgcatgaaagaaaaggatatggaatatttccatcga
tcccatgcgtggattaccgcatttttgccttatgaaaaacccaaatacgctatcactatt
ttagtagaacatggggaaggggggtcaaaactagggggcctgttagtgaagatgagtaat
aaactctatgagcttggctatctttaa
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