Helicobacter pylori SouthAfrica7: HPSA_07950
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Entry
HPSA_07950 CDS
T01921
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hes
Helicobacter pylori SouthAfrica7
Pathway
hes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPSA_07950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hes03400
]
HPSA_07950
Enzymes [BR:
hes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HPSA_07950
DNA repair and recombination proteins [BR:
hes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HPSA_07950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Motif
Other DBs
NCBI-ProteinID:
ADU85531
UniProt:
E8QUX9
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All DBs
Position
1614694..1617693
Genome browser
AA seq
999 aa
AA seq
DB search
MIQSILYRALNKGFDHQILACKDFKESQLAKEVISYVKPHAKAILFPEFRAKKNDDLRSF
FEEFLHLLGALREFYQALENKQEAIIIAPISALLHPLPKKELLKSFKITLLEKYDLKALK
DKFFYYGYEILDLVEVEGEASFRGDIVDIYAPNSKAYRLSFFDTECESIKEFDPITQMSL
KEELLEIEIPPTLFSLDEQSYQNLQTKVKQSPLNSFSKDLASFGLWFLDEKAQDLLSVYK
SIISPKALEEIQELASLNELDLERFKPLKILETPQGYEDLEIHARAIESFIALHSNRKIT
LLAPNKTILDNALGALERSHIQCTIAPFVLNFKTPDEIFISLNSFERKKKRQKSKLALNE
LNAGEWVVHDDYGVGVFSQLVQHSVLGSKRDFLEIAYLGEDKLLLPVENLHLIARYVAQS
DSVPTKDRLGKGSFLKLKAKVRTKLLEIASKIIELAAERNLILGKKMETHLAELEIFKTH
AGFEYTSDQEKAIAEISKDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVV
PTTLLAHQHFETLRARFENFGVKVARLDRYVSEKNKLLKAVESGLVDALVGTHAILGAKF
KNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALSQIKGISSLKTPP
TDRKPSRTFLKEKNDELLKEIIHRELRRNGQIFYIHNHIASISKVKKELENLIPKLKIAI
LHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNAQNFGLADLHQLR
GRVGRGKKEGFCYFLIEDQKSLSDQALKRLLALEKNSYLGSGESIAYHDLEIRGGGNLLG
QDQSGHIKNIGYALYTRMLEDAIYELSGGKKRLEKSVEIQLSVSAFLNPELIASDSLRLD
LYRRLSLCENVDEVGQIHEEIEDRFGKMDALSEQFLQIITLKILANELGILKLSNFNQNI
TIAYSDENKESLKAPSKDDNDILETLLKHLRAQISLKRH
NT seq
3000 nt
NT seq
+upstream
nt +downstream
nt
atgatccaatctatcctttatagagccttaaataaaggttttgatcatcaaatactcgct
tgtaaggattttaaagaatctcaactcgctaaagaagtcataagctatgtgaagccacat
gccaaagccattctttttccggaatttagggctaaaaaaaatgacgatttgcgttcgttt
tttgaagaatttttacaccttttaggggctttaagggagttttatcaagccttagaaaac
aagcaagaggctatcattattgcccctattagtgcgttattgcaccctttgcctaaaaaa
gaacttttaaaaagctttaaaatcactcttttagaaaaatacgatcttaaggcgttaaaa
gacaagttcttttattatggttatgagattttagatttagtggaagtggaaggggaggcg
agctttaggggggatattgtggatatttatgcacccaattctaaagcgtatcgcttgagt
ttttttgacacagaatgcgagagcattaaggaatttgatccgatcactcaaatgagtctt
aaagaggaattactagaaattgaaatcccccccacgctttttagtttggacgaacaatcc
tatcaaaatttgcaaacaaaagtcaaacaaagccccttaaatagcttttctaaagattta
gccagttttggtttgtggtttttagacgaaaaagcgcaagacttgttaagcgtttataaa
agcatcataagccccaaagctttagaagaaattcaagaattagcgagcttgaacgaattg
gatttagagcgtttcaaacctttaaaaatcttagaaaccccccaaggctatgaagattta
gaaatccatgcacgtgcaatagaaagctttatcgctttgcattcaaatcgtaaaatcacg
ctcctagcccccaataaaacgattttagacaatgccttaggcgcgcttgaaagaagccac
attcaatgcaccatcgccccctttgtgttgaattttaaaacccctgatgagatttttatc
tcgctcaattcttttgaaaggaagaaaaaacgccaaaaatccaagctcgctttgaacgaa
ttgaatgcaggcgagtgggtggtgcatgatgattatggggtgggcgtgttttctcaatta
gtccagcacagcgttttagggagcaagagggattttttagagatcgcttatttgggcgaa
gacaaactgctattaccggtagaaaatctgcatctaatcgctcgttatgtggcgcaaagc
gacagcgtgccgactaaagaccggctagggaaggggagttttctcaaactaaaagctaaa
gtaagaaccaaacttttagagattgcaagcaagatcattgaattagcggctgaacgcaat
ttgatcttgggtaaaaagatggaaacgcatttagcggagttggaaatctttaaaacgcat
gcgggttttgaatacacgagcgatcaagaaaaagccatcgctgaaatttcaaaggattta
agctctcatagggtgatggacaggctattgagcggtgatgtgggttttgggaaaacggaa
gtggcgatgcatgcgattttttgtgcgtttttaaacggctttcaaagtgcattagtcgtg
ccgactaccttactagcccaccagcattttgagactttaagggcgcgttttgaaaatttt
ggcgttaaagtggctcgtttggatcggtatgtgagcgaaaaaaacaagcttttaaaagcg
gtggaatcagggttagttgatgcgcttgtaggcacgcatgcgattttaggcgcgaaattc
aaaaacttgggtttaatggtagtggatgaagagcataaatttggcgtgaaacaaaaagaa
gccttaaaagaattgagcaaaagcgtgcattttttaagcatgtccgctacgcccattccg
cgcactttaaacatggcgctctctcaaattaaaggcattagctctttaaaaaccccaccc
acagacagaaagcccagccgcacttttttgaaagaaaagaatgatgaactcttaaaagag
attatccatagagaattgcgccgtaacgggcaaattttttatatccataaccatatcgct
agcatttcaaaagtcaaaaaggaattagaaaatttaatccctaaactcaaaatcgctatt
ttgcattcccaaattaacgctaacgagagcgaagagatcatgttagagtttgctaaaggg
aattatcaggttttattatgcacttctattgtggaatccggtattcatttgcctaacgct
aacacgattattattgataatgcacagaatttcgggctggctgatttgcaccaattaaga
gggcgtgtggggagaggcaaaaaagaaggcttttgctattttttgatagaagatcaaaaa
agtttgagcgatcaagctttaaaacgcttgctcgctttggaaaaaaattcgtatttgggc
agtggggagagtatcgcttatcatgatttagaaatcagggggggcgggaatttgctggga
caagatcaaagcgggcatattaaaaatatcggctatgcactctatacgcgcatgcttgaa
gacgcgatttatgaactgagtggggggaaaaaaaggcttgaaaagagcgtagaaatccaa
ttgagcgtgagcgcttttttaaaccctgaactcattgcaagcgatagtttgaggttggat
ttgtatcgccgtttgagtttgtgtgaaaatgtagatgaggtggggcaaatccatgaagaa
atagaagacaggtttggcaaaatggacgctttgagcgagcaatttttgcaaatcattacg
cttaaaattttggctaatgagcttggcattctcaaactttctaatttcaatcaaaacatc
accatcgcttatagcgatgaaaataaagagagtttaaaagccccaagcaaagacgataac
gatattttagaaacccttttgaaacatttacgcgctcaaatttctttaaaacggcactaa
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