Candidatus Hydrogenisulfobacillus filiaventi: R50_1197
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Entry
R50_1197 CDS
T08923
Name
(GenBank) ATP-dependent DNA ligase clustered with Ku protein, LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hfv
Candidatus Hydrogenisulfobacillus filiaventi
Pathway
hfv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R50_1197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hfv03400
]
R50_1197
Enzymes [BR:
hfv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R50_1197
DNA repair and recombination proteins [BR:
hfv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R50_1197
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
CAB1128703
UniProt:
A0A6F8ZGB0
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All DBs
Position
1:1118315..1119133
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AA seq
272 aa
AA seq
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MFPAAGITRERLARYYARVAPALLPYLAGRWITVRRWPEGVDAPGFYQRHPLSAREGAGP
GITIATAADLVRWVGWGTVEFHAPLGPAAAPDRHDWAVMDLDPEPEAGWDRVRTAAEGVL
WLLERAGLPYRLKTSGHEGLHIFIPIRPLAAGAVTLAMGALARAVAAALPETATVERQVD
KRGPRVYLDYLQNADRRSMVAPYSVRGTAAARVSTPIRREELPLGPAPWTLEVVERRLAT
EGDLFAWEGPRADLSAAVAALGLPAAPGRSRA
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
gtgttcccggcggccggcatcacccgggagcggctggcccgctattatgcccgggttgca
ccggcgctgctcccctatctggccgggcgctggatcacggtgcggcgctggccggaaggg
gtggatgcccccggattctaccagcgccatcccctgtccgcgcgggaaggcgcggggccg
ggcatcaccatcgcgacggccgccgacctggtgcgctgggtggggtgggggacggtggag
ttccacgcccccctggggccggccgccgcccccgaccggcacgattgggcggtcatggac
ctcgaccccgagcccgaggccgggtgggaccgggtgcgcaccgccgcggaaggggtgctg
tggctgctcgagcgagccggtctcccctaccggttgaagacctccggccatgaagggctg
cacatctttatccccatccggccgttggcggccggggcggtgaccctggccatgggggcg
ctggcgcgggcggtggctgccgccctgcccgaaacggcgaccgttgaacggcaggtggac
aaacggggaccccgggtgtacctggactatctgcagaacgccgaccggcgtagcatggtg
gccccttacagtgtccggggcaccgccgccgcccgcgtctctactcccatccggcgggag
gagctgcccctggggccggccccctggaccctggaggtggtggaacgccggctggccacc
gaaggggacctgtttgcctgggaagggccgcgcgccgacctgtccgccgccgttgcggcc
ctgggcctgccggcggcgccgggaaggagccgggcgtga
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