Heterocephalus glaber (naked mole-rat): 101702301
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Entry
101702301 CDS
T02812
Symbol
Lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Pathway
hgl03030
DNA replication
hgl03410
Base excision repair
hgl03420
Nucleotide excision repair
hgl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
101702301 (Lig1)
03410 Base excision repair
101702301 (Lig1)
03420 Nucleotide excision repair
101702301 (Lig1)
03430 Mismatch repair
101702301 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hgl03032
]
101702301 (Lig1)
03400 DNA repair and recombination proteins [BR:
hgl03400
]
101702301 (Lig1)
Enzymes [BR:
hgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101702301 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
101702301 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
101702301 (Lig1)
DNA replication proteins [BR:
hgl03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
101702301 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
101702301 (Lig1)
DNA repair and recombination proteins [BR:
hgl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
101702301 (Lig1)
NER (nucleotide excision repair)
Other NER factors
101702301 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
101702301 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
101702301
NCBI-ProteinID:
XP_004867084
LinkDB
All DBs
Position
Un
AA seq
918 aa
AA seq
DB search
MQRSIMSFFHPMKEGKAKKPEKETNNSSREMEPPPKVALKEWNRVVPESESPVKRPKRKV
VPALSSEGEEEDEALSPTKDQNPGPGSPQGSPSSPATSPKNSPSLSDTSPMDVSPSGIPK
RLTARKQLPKRVIQADLEDQSEDRNREAKRRRKEEKEAEVPGESPTETGVAEVKEEEERG
QPWTPPELPAPPKAETPTETESVSTPKGTGKQEPQEKDRNKAAPRGPRTLSSFFMPRKPA
VRTQVKEQSGTPGKEEAEGSLDPVSYNPAKNNYHPIEDACWSRGQKVPYLAVARTFEKIE
EVSARLRMVETLSNLLRSVVALSPPDLLPVLYLTLNRLGPPQQGLELGVGDGVLLKAVAQ
ATGRQLESVRAEAVEKGDVGLVAENSRSTQRLMLPPPPLTSAGVFSKFRDIAQLTGSAAV
TKKMDIIKGLFVACRHSEARFIARALSGRLRLGLAEQSVLAALSQAVSLTPPGQEFPPAV
VDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLQEHGLEHLPEHCRLSPGVPL
KPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVVEGGEVKIFSRNQEDNTGKYPD
IISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAAEIQVQVCLYAF
DLIFLNGESLVRQPLSQRRQLLRENFVETEGEFVFATSLDTKDMEQIAEFLEQSVKDSCE
GLMVKTLDVNATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLL
AVYDKESEELQAICKLGTGFSDEQLEEHYQSLQALVLPTPRPYVRADGAVAPDHWLDPSA
VWEVKCADLSLSPVYPAARGLVDSEKGISLRFPRFIRVREDKKPEEATTSAQVACLYRKQ
SQIQNQGIDSDSDNEDFY
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggagtatcatgtcatttttccaccccatgaaagagggtaaagcaaagaagcct
gagaaggagacaaacaacagcagcagagagatggagccccctccaaaggtggcactaaag
gagtggaacagagtggtgcctgagagcgagtctccggtgaagaggccgaagaggaaggtg
gtcccggccttgagcagtgaaggggaggaggaagatgaagctctcagccccaccaaagac
cagaatcctgggccaggctccccacaggggtccccttccagtcctgccacaagtcccaag
aatagcccttccctctcggacacctcccccatggatgtctccccatcaggaatcccaaag
cgtctcacagctcggaagcagctcccaaaacgagtaattcaggctgacctggaagatcag
agtgaggacaggaacagggaagccaagaggaggaggaaggaggagaaagaagcagaggtg
ccaggagaaagccccacagagactggggtggcagaagtgaaggaagaggaggagaggggc
cagccctggacaccgcctgagctcccagcgccccccaaagcagagaccccaacagagaca
gaaagtgtttccacacccaaggggactgggaagcaggagccacaggaaaaggaccggaac
aaggctgctcccagaggacccaggaccctcagcagtttcttcatgccccggaagccggca
gtcagaacccaagtgaaggagcagtcaggtactccgggaaaggaggaggccgagggatcc
ctggacccagtaagctacaatcccgccaagaacaactaccatcccattgaggatgcctgc
tggagtcggggccagaaggtcccttacctggccgtggcccggacgtttgagaagattgag
gaggtttctgctcggctccggatggtggagacgctgagtaacctgctgcgctctgtggtg
gccctgtcccctccagacctgctccctgtcctctacctcacccttaaccgccttgggcct
ccccagcagggcctggagcttggcgttggcgatggtgtccttctcaaggccgtagcccag
gccacaggccggcagctggaatctgtccgggccgaggctgttgagaagggtgacgtgggg
ctggtggccgagaacagccgtagcacccagagactcatgctgccgccgcctcctcttacc
agcgctggggtcttctccaagttccgggacatcgcccagctcaccggcagcgctgccgtg
accaagaagatggatatcatcaaaggcctctttgtcgcctgccgccactcagaagcccgc
ttcatcgccagggccctgagtggacggcttcgccttgggctggccgagcagtcggtgctc
gctgccctctcccaggctgtgagcctcacacccccaggccaagaattccctccagccgtg
gtggatgctgggaagggcaagactgcagaggccagaaagacgtggctggaggaacaaggc
atgatcttgaagcagacgttttgtgaggtgcctgacctggaccgaatcatccctgtgctt
caggagcatggcctggagcatctcccggagcactgcaggctgagcccaggcgtccctctg
aagccgatgttggcccatcccactcggggtgtcagtgaagtcctgaaacgctttgaggag
gcagccttcacctgcgagtacaaatacgatgggcagagggcacagatccatgttgtggaa
ggcggggaagtgaagatcttcagcaggaatcaggaagacaacacgggaaagtaccccgac
atcatcagccgcatccccaagattaaactcccctcagtcacatcctttatcctggacacc
gaagcagtggcttgggaccgggagaagaagcagatccagccgttccaagtgcttaccact
cgcaagcggaaggaggtagacgcggcagagatccaggtgcaggtgtgtctgtatgctttc
gacctcatcttcctcaacggagagtccctggtccgtcagcccctgtcacaacgccggcag
ctgctccgggagaactttgtagagacggagggcgagtttgtcttcgctacctccctggac
accaaggacatggagcagatagctgagttcttggagcaatcggtgaaagactcctgcgag
gggctgatggtgaagaccttggatgtgaatgccacctacgagatcgccaagaggtcgcac
aactggctcaagctgaagaaggactacctcgatggtgtgggtgacaccctggacctcgtg
gtgatcggtgcctacctgggccggggaaagcgggccggccgctatggaggctttctgctg
gctgtctatgataaggagagcgaggagctgcaggccatatgcaagcttggaacgggcttc
agcgatgagcagctggaagagcattaccagagcctccaggccctggtgctgcccacccca
cgcccctacgtgcgggctgacggtgctgtggcgcccgaccactggctggaccccagcgcc
gtgtgggaggtgaagtgcgctgatctctcgctctcccccgtctaccctgctgcccggggc
ctggtggacagtgagaagggcatctcccttcgcttccctcggtttattcgcgtccgtgaa
gataagaagccagaggaggccactaccagtgcccaggtggcctgtctgtatcgcaagcaa
agtcaaattcagaaccaaggtattgactcagactctgataatgaagatttctactaa
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