Heterocephalus glaber (naked mole-rat): 101704366 Help Entry 101704366         CDS       T02812                                  Symbol Upf1 Name (RefSeq) UPF1, RNA helicase and ATPase   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism hgl  Heterocephalus glaber (naked mole-rat) Pathway hgl03013   Nucleocytoplasmic transport hgl03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:hgl00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     101704366 (Upf1)    03015 mRNA surveillance pathway     101704366 (Upf1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:hgl03019]     101704366 (Upf1) Enzymes [BR:hgl01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      101704366 (Upf1)     5.6.2.5  RNA 5'-3' helicase      101704366 (Upf1) Messenger RNA biogenesis [BR:hgl03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      101704366 (Upf1)    mRNA cycle factors     Common to processing body (P body) and stress granule      101704366 (Upf1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase ATPase nSTAND3 Helicase_RecD DEAD AAA_16 UvrD-helicase SRP54 UvrD_C_2 AAA_22 Motif Other DBs NCBI-GeneID:  101704366 NCBI-ProteinID:  XP_004873450 LinkDB All DBs Position Un AA seq 1136 aa AA seqDB search MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGAG GPVGAGAGGATGQLDAQVGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPI HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVII WLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDTNLTQRPDYGDEIAIELRSSVGAP VEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKR FTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAP SNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKD ETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQAT EPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQY RMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGT SYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVE IASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQ PLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAII PGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQAN GPAAGRGAPKSKTSRGARQKNRFGLPGPSQTPLPSSQASQDVASQPFSQGALTQGYISMS QPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY NT seq 3411 nt NT seq  +upstreamnt  +downstreamnt atgagtgtggaggcgtacgggcccagctcgcagactctcaccttcctggacaccgaagag gccgagctgctgggggccgacacgcagggctccgagttcgaattcaccgacttcaccctc cccagccagacgcagacgccccccggcggccccggcggcccgggcgggggtggcgctggg ggccccgtcggcgcgggcgcgggcggcgcgaccggacaactcgacgcgcaggttggacct gagggcatcctgcagaatggggccgtggatgacagtgtggccaagaccagccagctgttg gccgagctgaacttcgaagaggatgaagaagacacctactacacaaaggacctccccatc cacgcgtgcagttactgcggaatacacgatcctgcctgcgtggtttactgtaataccagc aagaagtggttctgcaacggccgaggaaatacttctggcagccacattgtaaatcacctc gtgagggcaaaatgcaaagaggtgaccctgcacaaggatgggccgctgggggagacagtc ctggagtgctacaactgcggctgccgcaacgtcttcctcctcggcttcatccccgccaag gccgactcggtcgtggtcctgctgtgcaggcagccctgcgccagccagagcagcctcaag gacatcaactgggatagctcgcagtggcagcccctgatccaggaccgctgcttcctgtcc tggctggtcaagatcccctcggagcaggagcagctgcgggcacggcagatcacagcccag cagatcaacaagctggaggagctctggaaggaaaacccttcagccaccctggaggacctg gagaagccaggggtagacgaggagccgcagcacgtcctgctgcgctacgaagatgcctac cagtaccagaacatcttcggccccctggtcaagctggaggccgactatgacaagaagctg aaagagtcacagacgcaagataacatcacggtcaggtgggacctgggccttaacaagaag agaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcataatt tggttaagagacatgcggctcatgcagggggacgagatctgcctgcgctataagggggac ctggcacccctgtggaagggcatcggccacgtcatcaaggtccctgacacaaacttaact cagcgcccagattacggtgatgagatcgccatcgagctccgcagcagcgtgggcgctccc gtggaggtgacgcacaacttccaggtggacttcgtgtggaagtcgacctcgtttgacagg atgcagagtgcgctgaagaccttcgcggtggacgagacctccgtgtcaggctacatctac cacaagctgctgggccacgaggtggaggacgtgatcatcaagtgtcagctgccaaagcgc ttcactgcgcaggggctccccgacctcaaccactcgcaggtatacgctgtgaagactgtg ctgcagaggccgctcagcctcatccagggcccgcctggcacggggaagaccgtgacatct gccaccatcgtctaccacctggctcggcagggcaacgggcctgtgcttgtctgtgcccca agcaacatcgccgtggaccagctgacggagaagatccaccagacggggctgaaggtcgtg cgcctctgcgccaagagccgtgaggccatcgactccccggtgtccttcctggccctgcac aaccagatcaggaacatggacagcatgccggagctacagaagctgcagcagctgaaggac gagaccggggagctgtcgtccgctgacgagaagcggtaccgggccctcaagcgcacggcg gaacgggagctgctcatgaatgctgacgtcatctgctgcacctgtgtgggcgccggtgac ccgaggcttgccaagatgcagttccgctccatcctgatcgacgagagcacccaggccacg gagcctgagtgcatggtgcccgtggtccttggggccaagcagctgatcctcgtgggcgac cactgccagctgggcccggtggtgatgtgcaagaaggcggccaaggccgggctgtcgcag tccctctttgagcgcctggtggtgctgggcatccgccccatccgcctgcaggtccagtac cgcatgcaccccgcgctcagcgccttcccgtccaacatcttctatgagggctcgctgcag aatggcgtcactgcagccgaccgtgtgaagaagggtttcgacttccagtggccccagcct gacaagcccatgttcttctacgtgacccagggccaggaggagatcgccagctcgggcacg tcctacctgaacaggacggaagcggcgaatgtggagaagatcaccaccaagctgttgaag gccggtgccaagcctgaccagatcggcatcatcacgccctatgagggccagcgctcctac ctggtgcagtacatgcagttcagcggctccctgcacaccaagctctaccaggaggtggag atcgccagcgtggacgccttccagggacgcgagaaggacttcatcatcctgtcctgtgtg cgggccaatgagcaccaaggaatcggctttctaaacgacccccggcgcctcaacgtagcc ctgaccagagctaggtacggcgtcatcatcgtgggcaaccctaaggcactgtcgaagcag ccgctgtggaaccacctgctgaactactacaaggagcagaaggtgctggtggaggggccg ctcaacaacctgcgcgagagcctcatgcagttcagcaagccgcgcaagctggtcaacacc atcaacccgggggcccgcttcatgacaactgccatgtacgacgcccgggaagccatcatc ccagggtccgtgtacgaccgcagcagccagggccggccctcaaacatgtacttccagacc cacgaccagatcggcatgatcagcgccggcccaagccacgtggccgccatgaacattccc atccccttcaacctggtcatgccgcccatgccgccgcccggctacttcggacaggccaac gggccggcagcaggccggggtgccccgaaaagcaagaccagtcgtggggcgcgccagaag aaccgcttcgggctccccgggcccagccagacccccctccccagcagccaggccagccag gacgtggcatcgcagcccttctcgcagggcgcgctgacgcagggctacatctccatgagc cagccctcccagatgagccagcccggcctctcccagcccgagctgtcccaggacagctac ctgggtgatgagtttaaatcccagatcgatgtggcgctgtcccaagactccacgtaccag ggagagcgggcgtaccagcacggcggggtgacagggctgtcccagtactag

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