Heterocephalus glaber (naked mole-rat): 101704744
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Entry
101704744 CDS
T02812
Symbol
Pabpc1l
Name
(RefSeq) poly(A) binding protein cytoplasmic 1 like
KO
K13126
polyadenylate-binding protein
Organism
hgl
Heterocephalus glaber (naked mole-rat)
Pathway
hgl03015
mRNA surveillance pathway
hgl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hgl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101704744 (Pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
101704744 (Pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hgl03019
]
101704744 (Pabpc1l)
03041 Spliceosome [BR:
hgl03041
]
101704744 (Pabpc1l)
Messenger RNA biogenesis [BR:
hgl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101704744 (Pabpc1l)
mRNA cycle factors
Stress granule specific factors
101704744 (Pabpc1l)
Spliceosome [BR:
hgl03041
]
Complex C
Other components
Complex C specific factors
101704744 (Pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
MARF1_RRM1
Nup35_RRM
SET_assoc
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
101704744
NCBI-ProteinID:
XP_004858234
LinkDB
All DBs
Position
Un
AA seq
613 aa
AA seq
DB search
MQAGGQGYPLSSLYVGDLHPDVTEAMLYETFSPVGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDSKALYDTFS
TFGNILSCKVACDEHGSRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHRERE
AELGAQALAFTNIYVKNLHVDMDEQGLQDLFFEFGKMLSVKVMRDNSGHSRGFGFVNFEK
HEEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQMKQDRQTRYQGVNLYVKN
LDDSISDEKLRTVFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGCIVGT
KPLYVALAQRKEERKAILTNQYMQRLSTVQALGRPVMGSFQQPNSYFLPAVAQPPAQATC
YGGSGSVAPVQPAPRWTAQPQRASSVCPPTASVVRPPGLPRRPRAHVSSVRQASTQVPYL
APHTKKVANIGTQTMGASRACSTEGPSLSAVLTAHGVPEPAVHVPGQEPLTASMLAAAPL
HEQKQMIGERLYRLIPEVYAALAGKITGMLLEIDNSELLLMLESPESLQAKVEEAVAVLQ
AHQAMEQPKEYMH
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccggcggccagggctaccccctctcctcgctctacgtgggcgacctgcatccg
gacgtgaccgaggccatgctctacgagacgttctctccagtcggccccatcctgtccatc
cgcgtgtgtcgcgacgtggccactcggcgctcgttgggttatgcctacatcaactttcag
cagccagcagacgcggaacgggcactggacacaatgaactttgaggtgatcaaaggccaa
cccatccgaattatgtggtctcagcgagacccaggacttcgaaagtcaggtgtgggcaac
gtcttcataaagaacttggaggattccattgacagcaaggctttgtatgataccttctct
acctttgggaacatcctctcttgcaaggtggcgtgtgatgagcatggctctcgtggcttc
ggctttgtgcattttgagaccaatgaggctgcacaacaggccatcagcaccatgaatgga
atgctgctgaatgaccgcaaagtttttgttggccacttcaagtctcaccgggaacgggag
gcagagctaggggctcaagccctggcgttcaccaacatctatgtgaagaacctccacgtg
gacatggatgagcagggcctgcaggacctcttctttgagtttggaaagatgctgagtgtg
aaggtgatgagggacaacagtggccactcccggggctttggctttgttaactttgagaag
catgaggaagcccagaaggctgtggaccacatgaacggaaaggaggtgagtgggcagcag
ctgtatgtgggccgggcccagaagcgaggagagcggcagaatgaactgaagcgcaggttt
gagcagatgaagcaggaccggcagacccgctaccagggtgtgaacctgtatgtgaagaac
ctggacgactccatcagtgatgagaaactgaggacagtgttctctccctacggagtgatt
accagtgcgaaggtgatgacagagggtggccacagcaagggatttggctttgtgtgtttt
tcctctccagaagaggcgacaaaggccgtgacagagatgaacgggtgtattgtgggcacc
aagccgctgtacgtggcactggcccagcgtaaagaggaacggaaggccatcttgaccaac
cagtacatgcagcgcctctccacggtgcaggccttgggccgccccgtcatgggctccttc
cagcagcccaacagctacttcctgcccgctgtggcccagcctccagcccaggctacatgc
tatggtggctctggctccgtggcccccgtccagcctgcccccaggtggacagcccagcca
cagagagcgtcatctgtctgccctccaactgcctcagtggtccggccaccaggcttgccc
cggcgcccccgggcccatgtcagcagtgtcaggcaggcctctacccaggtgccgtacctg
gcaccccacaccaagaaagtggccaacattggtacccagactatgggagccagcagggca
tgctctacagaagggccatctctctcagctgtacttacggcccatggggtcccggagcct
gctgtgcacgtccctggccaagagcccctgactgcgtctatgctggctgcagcgccgctc
catgagcaaaagcagatgattggggagcgtctctatcgtcttatccctgaggtttatgct
gcgctggctggcaagatcacaggcatgctgctggagatcgacaattcagagctgctgctc
atgctagagtctccagagtccctccaagctaaggtagaagaggcggtggcggtactacag
gcacaccaagccatggagcagccgaaggagtacatgcattga
DBGET
integrated database retrieval system
