Halorhodospira halophila: Hhal_1257
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Entry
Hhal_1257 CDS
T00462
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hha
Halorhodospira halophila
Pathway
hha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Hhal_1257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hha03400
]
Hhal_1257
Enzymes [BR:
hha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Hhal_1257
DNA repair and recombination proteins [BR:
hha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Hhal_1257
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABM62032
UniProt:
A1WWH0
LinkDB
All DBs
Position
1363268..1366711
Genome browser
AA seq
1147 aa
AA seq
DB search
MLLGDLPLPQRPAERRDWSGLLGAAQPLAIAEAARQHDGPVIAVTGTPQQAAALQEAVGF
FLGDDVPVLGFPDWETLPYDVFSPHQDIISERLLGLYRLPAMTRGVLVVPAATLMHRLPP
RGWLEGRSLMLHPGDRLEIEPMRRRLEAAGYRCVPEVGEHGEFAVRGALLDLFPMGGETP
YRIDLFDDEVESLRRFDPETQRTTDQVDAIELLPAREFPTDEGGITRFRQAFRAEFEGDP
ARSFLYRAVSEGRIPGGIEYYLPLFFEETATLFDYLPEGTLAIRLEGTDATADGFWQQVQ
DRYEQRTGDMDRPPLPPRRVFLDGDELRAGLNRRPQVVLHGEPGRGSDADVDALPELAAR
PQADRPLERLEQFHAGYPGRILFTAESAGRRQGLQERLTRSGIEARSVQGWRDFLDGDVP
AAITVAPLETGARIDGIAIIPESALYGERARQSRRRRSSASTDPAAVIRDLSDLHEGAPV
VHEDHGVGRYVGLQSLSVGDVTTEFLTLEYAGGDKLYVPVSALDRISRYTGADADEAPQH
RLGSDQWDKARRHAAKRARDVAAELLDLYARRQARAGDACLFDDEAYEAFASAFPFEETP
DQQAAIQAVLDDLRSDQPMDRVVCGDVGFGKTEVAMRAAFAGVQAGRQVAMLVPTTLLAQ
QHYQNFADRFADWPVRIESLSRFTGKKGNEKTLARIASGEADVVIGTHKLLGSEVQFKNL
GLVIIDEEQRFGVRQKERLKRLRAEVDVLTLTATPIPRTLNMSMAGIRDLSVIATPPERR
LAVKTFVQEWSDGLIREACQRELQRGGQVYFLYNDVKSIERTANQLRDLMPEARIGVAHG
QMRERELEQVMLDFYHQRFDILVCTTIIESGIDIPTANTIIIHRADRFGLAQLHQLRGRV
GRSHHRAYAYLLAPPPNAMTADALKRLEAISQLEDLGVGFALASHDLEIRGAGELLGDEQ
SGQIQEVGFTLYSQLLERAVKDLKAGRDPAPEAELDTGVEVDLRLSALLPADYLPDVHTR
LVQYKRISSARSDAELEELQIEMIDRFGLLPDAARNLFRTASLKLRAEALGIRKVEAGPS
GGTIHFGPQPQIDPGRLVQMVQQEPGKYRLDNQQRLHLSDDLSDETARFEAMERLLERLH
ASEEVAG
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
gtgttgctcggcgacctgcccctcccccaacgtcccgccgagcggcgggactggtccggg
ctgctcggcgctgcccagccgctggccatcgccgaggccgcccggcagcacgacggccca
gtcatcgccgttaccgggacgccgcagcaggccgccgccttgcaggaggcggtcggcttc
ttcctcggcgatgacgtgccggtgctcggtttcccggactgggaaaccctgccctacgat
gtcttctccccgcatcaggacatcatctcggagcgcctgctcgggctctaccgcctgccg
gcgatgacccggggcgtgctggtggtcccggcggccacgctcatgcatcgcttaccgccg
cgcggctggttagagggccggtcgctgatgctgcatccgggcgaccgattggagatcgag
cccatgcgccgccgcctggaggccgccggctatcggtgcgtgccggaagtaggcgagcat
ggcgaattcgcggtgcgcggcgccctgctcgacctcttccccatgggcggcgagacgccg
tatcgcattgacctgttcgacgacgaggtggagagcctgcgccgcttcgacccggagact
cagcgcaccacggatcaggtcgatgccatcgagctgctgccggcccgagaattcccgacg
gacgaaggcggcatcacccgtttccgccaggcattccgcgccgagttcgagggcgatcca
gcgcgcagcttcctctatcgcgccgtcagcgagggccgcattcccggcgggatcgaatac
tacctgccgctgttcttcgaagagacggccacgctgttcgactacctgcccgagggcacc
ctggccatccgtctcgagggcaccgacgccactgcagacggtttctggcagcaggtccag
gaccgttacgaacagcgcaccggagacatggatcgcccgcccttgcctccgcgacgcgtc
ttcctcgacggggacgagctgcgcgccgggctcaaccgccgcccgcaggtggtcctacac
ggcgagccggggcgcgggagcgacgccgacgtcgacgcactccccgagctggcagctcgc
ccgcaggcggaccgaccgttggagcgactcgaacagttccacgccggctacccggggcgg
attctgttcaccgccgagagcgccggacgtcggcaggggctgcaggaacgactgacccgg
tccgggatcgaggcccgatcggttcagggttggcgcgacttcctcgacggcgacgtgccg
gcggccatcaccgtcgcgccgctggagacaggcgcgcgcatcgacggcatcgccatcatc
ccggagagcgcactctacggcgaacgcgctcgacagagccggcgacgccgctcgagcgcc
tcgacggacccggcagcggtcatccgcgacctctccgatctgcacgagggcgccccggtc
gtccacgaggaccacggggtgggccgctatgtcggcctgcagagcctcagcgtgggggat
gtcaccaccgagttcctcaccctggagtacgccggcggtgacaaactgtacgtgccggtc
tcggctctggatcgcatctcccgctacaccggcgccgacgccgacgaggctcctcaacac
cgcctgggcagtgatcagtgggacaaggcgcgccgccatgcggccaagcgcgcccgcgat
gtcgccgccgaattgctcgatctttacgcgcggcgtcaggcccgggccggcgatgcctgc
ctgttcgatgacgaggcctacgaagcctttgcgtccgccttcccctttgaggagaccccg
gaccaacaggccgccatccaggccgtcctcgatgacctgcgctccgaccagcccatggac
cgggtggtctgcggcgatgtcggcttcggcaagactgaggtcgccatgcgcgcggccttc
gccggcgttcaagcggggcgacaggtggccatgctggtgccgacgaccctgctggcccag
cagcactatcagaacttcgccgaccgcttcgctgactggccggtgcggatcgagtcgctg
tcgcgctttaccggcaagaagggcaacgagaagacgctggcacggattgccagcggcgag
gccgacgtggtcatcggcacccacaagctgctcggcagtgaggtccagttcaagaacctg
ggcctggtcatcatcgatgaggagcagcggttcggggtccggcagaaggaacggcttaag
cgactgcgcgccgaggtcgatgtcctgaccctcaccgccacgccgataccgcgcaccctg
aacatgtccatggcggggatccgggatctgtccgtcatcgccacccccccggaacgccgc
ctggcggtgaagaccttcgttcaagagtggagcgatggtctcatccgtgaggcgtgtcag
cgggagctccagcgcggcgggcaggtctacttcctctacaacgacgtgaagtccatcgag
cggactgccaatcagctgcgggacctgatgccggaggcacgcattggcgtcgcccacggc
cagatgcgcgaacgggagctcgagcaggtgatgctcgacttctaccaccagcgcttcgat
atcctggtctgcacgacaatcatcgagtcggggatcgacatccccacggccaacaccatc
atcatccaccgggcggaccgattcgggctggcccagttgcaccagctccgcggtcgcgtg
gggcgctcccaccatcgcgcctatgcctatctactcgcgccgccgccgaacgcaatgacc
gccgacgcgcttaaacggctggaggccatctcgcagctcgaggatctgggcgttggattt
gccctcgcctcccacgacctggagatccgcggcgccggcgagctgctcggtgatgaacag
agcgggcagatccaggaggtcgggttcacgctctacagccagctgctggaacgggcagtc
aaagacctcaaggccgggcgggaccccgctccggaagccgagctcgacaccggcgtggag
gtcgatctgcgcctgtccgcgctgctcccggcggattacctgccggacgtacatacccgc
ctggttcagtacaaacggatcagtagcgcccgcagtgatgccgagctcgaggagctgcag
atcgagatgatcgaccgcttcgggctgctgcccgatgcggcgcgcaacctcttccgcacg
gcctctctcaaactccgggccgaggcgctgggcatccgcaaggtcgaggcgggcccctcc
ggcggcacgatccacttcggcccgcagccgcagatcgatcccgggcgcctggtgcagatg
gtccagcaggaaccgggcaagtaccgcctggacaatcagcagcggctgcacctcagcgat
gacctgagcgacgagacggcccgattcgaggcgatggagcggcttctggagagactccac
gccagcgaggaggtagcgggatga
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