Halobacillus halophilus: HBHAL_4934
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Entry
HBHAL_4934 CDS
T02031
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
hhd
Halobacillus halophilus
Pathway
hhd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
hhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HBHAL_4934 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhd03400
]
HBHAL_4934 (ligD)
Enzymes [BR:
hhd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HBHAL_4934 (ligD)
DNA repair and recombination proteins [BR:
hhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HBHAL_4934 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
CCG47271
UniProt:
I0JSZ9
LinkDB
All DBs
Position
3883894..3885663
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AA seq
589 aa
AA seq
DB search
MVKPMLLTLTDDLPGSDEWMYEVKYDGFRVLLHVNEGNITLTSRNGKDFTSQFPEISELK
IESDFSPFTLDGELVILNTPYQACFSALQQRGRLRNADKIQRSARQRPAVFMAFDYLNEE
KASYIERKKILEELLKTFRHPSIQAVESFPDLKEVEGLVHLHRGEGIIAKRKTSRYEAGV
RSKHWLKAKQWRAASGFLTSYDQSNGYYQLQVEEKNNSLYPLGRFKHGMTAEEDHTLRNF
FKEKGTRKKQVWELEPSVCVDIHCLNAEKGEMREPTFHQFRFDLSPSDCTLQKLKWDLSL
FPEQVEATNLSKELWNGLSKMDYLVYMRMVSPYLLRFLQDKKITLIRYPDGINQPSFYQK
HYPDHAPDYVDVFEEAGERYILCQNLSSLMWIANQGALELHLPFQKAGASFPDEIVIDLD
PPDQNHFHLAVSAASLLKPLMEKLNIKSFIKTSGNKGMQIHIPIPERTLSYEETRKLTET
FARVLVEQEPDLFTIERLKKKRGDRLYIDYVQHAEGKTIIAPYSARATKEATVATPVYWE
EVTKNLDPRSFTIKSIVERIERVGCPFSNYEKARYEQPIDQLRNVISDK
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaacctatgctattgacactgacggacgatctccctggaagtgatgagtggatg
tatgaagtgaaatatgatggatttcgtgtactcttacatgtgaacgagggtaacattaca
ctcacaagccgaaatggtaaggactttacttctcagtttcctgaaataagcgagttgaaa
atcgagtctgacttctccccttttacgctggatggggaactcgtcatcttaaacacccct
tatcaagcttgcttttctgcccttcagcaaagaggaaggttacgaaatgcagataaaata
cagcgatcggccaggcagagaccagccgtctttatggcgtttgactacctgaatgaggag
aaggcttcctacatagaaaggaagaagattcttgaagaacttcttaagaccttccgtcat
cccagcatacaggccgtcgaatcgtttcctgacctgaaggaggttgaaggccttgtccat
cttcatcgcggagaaggaatcattgcgaaaagaaaaactagccgctatgaagccggtgta
agatctaaacattggcttaaagccaagcaatggagagctgcttccgggtttcttacaagt
tatgaccaatcgaacggatactaccagcttcaagtggaagaaaaaaataacagcctttat
cctctggggcgctttaaacacggcatgacagctgaagaagatcatactttacgaaatttt
tttaaagagaaaggaactagaaaaaaacaggtgtgggagctagagccaagtgtatgtgtt
gatattcattgtttgaatgctgaaaaaggagagatgagagagcctacatttcaccagttc
cggtttgatctgtctccgtccgactgtactttacagaagctgaaatgggatttgtctctc
tttccggaacaagtggaagctacaaatctctccaaagaattatggaacggcctgtccaaa
atggactatttagtgtatatgagaatggtatcgccctatcttctacgttttcttcaagat
aagaaaataaccttaatccgctacccggacggaattaatcaaccatctttctatcaaaag
cactatcctgatcatgcgccggattatgtggatgtctttgaagaagcaggagaacggtat
attctatgtcaaaacttatcctccctgatgtggatcgccaaccagggggctcttgaactg
caccttccttttcaaaaagcaggagcttccttccctgatgaaattgtcattgacctggac
cctccagaccaaaatcactttcacctggccgtttcagcagccagcctgttaaaacctctt
atggaaaagctaaacattaaaagtttcataaaaacttccggaaataaaggaatgcaaatc
catatccctatcccagaacgcactctgagttatgaagaaaccaggaagctcaccgaaact
tttgcacgggtgcttgtggaacaagagcctgatctttttacaattgaacgtctcaaaaag
aaacggggagatcgtctctatatagactatgtacagcatgcagaaggcaaaacaataata
gccccctactctgctcgagcaaccaaagaagccacagttgccacccctgtgtattgggag
gaagtaaccaagaatcttgatcccaggtcgtttacgattaaaagtatagtagagcgtatt
gagcgagtgggctgtcctttttctaattatgaaaaagcaagatacgagcagccaattgat
caattgcgaaatgtaataagcgataaataa
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