Herbaspirillum huttiense: E2K99_15535
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Entry
E2K99_15535 CDS
T05937
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hhf
Herbaspirillum huttiense
Pathway
hhf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E2K99_15535 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhf03400
]
E2K99_15535 (mfd)
Enzymes [BR:
hhf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E2K99_15535 (mfd)
DNA repair and recombination proteins [BR:
hhf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E2K99_15535 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QBP76340
UniProt:
A0A4P7AA47
LinkDB
All DBs
Position
complement(3460762..3464199)
Genome browser
AA seq
1145 aa
AA seq
DB search
MSFDPKKSLPKAGVRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE
IPWFQPKEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA
LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP
MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFRNRWRE
VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR
FWSDTRSRWTFLHADRERPVLEPRAIYLDDEDFFTLLKPHARWVLKTDDSPSAISAPLPN
IAVNRRAEDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPALCDDWNDFLS
GNEPLMLGVAPLHAGFVTAGGLALITETELYAGSGRRVGSRKQQAATDVEYMVRDLSELK
IGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPE
DAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFG
FEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPT
TLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEV
KFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT
APQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQLLPEARI
GVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ
LRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV
LGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCG
DVHERLSLYKRFANCEKADAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKI
DAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITANMPDLNARVQQVKATM
KALTG
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgacccgaaaaaaagcctgcccaaagcaggtgtgcgtttccagcctcccgcc
gtgcacggttctgccgatgcctatctgctggcccaagccgcgctggccctcaaggccgaa
ggccgcatgctggccgtggtggtggccggggccaccgatgcccagcgcctgctggctgaa
atcccctggttccagcccaaggaaggcgagcgcctgcgttgccacctgctgccggactgg
gaaacgctgccctatgacgccttctcgccgcaccaggacctggtctccgaacgcctggcc
acgctctatgaagtgcagtccggccagtgcgacctgctgatcgtgccggccaccacagcc
ttgttgcgcatggcgccgccgcagttcctggcggcctataccttcttcttcaagcagggc
gaaaagctcgatgaaggcaagctcaagtcccagctcaccctggccggttacacccacgtg
ggccaggtcatgtcgccgggcgaatattcggtgcgcggcgggctgatcgacatcttcccc
atgggctcggtgctgccctatcgcctggacctgttcggcgacaccatcgagaccatccgc
accttcgacgccgatacccagcgctcgctttatccggtgcccgaggtacgcctgctgccg
ggtcgcgaattccccatggacgaggcctcgcgcctggccttccgcaatcgctggcgtgaa
gtgttcgagggtgatccgtcgcgctcggccatctacaaggacatcggcaacggcatcgcc
tcggcgggcatcgaatactacctgccgctgttcttcgaagagacggccacgctgttccag
tacctgccggccaatgccatgttcgccaccgtgggcgacatcgaacaagccatcaagcgc
ttctggagcgatacccgctcgcgttggaccttccttcacgccgaccgcgagcgcccggtg
ctggagccgcgcgccatctacctggacgatgaagatttcttcaccctgctgaaaccccac
gcccgctgggtgctcaagaccgatgattcgccttcggccatctcggcgccgctgcccaac
atcgccgtgaaccgccgcgcggaagatccgctggtcaacctgcgcagcttcctgctcaag
ggggccgagcgcgtgctgatctgtgccgaaagcaatggccggcgtgaaaccctgcagcag
tactttgccgaatacgacctgcatccggcgctgtgcgatgactggaatgatttcctctcc
ggcaatgagccgctgatgctgggcgtggccccattgcacgccggcttcgtcaccgccggc
ggcctggcgctgatcaccgagaccgagctgtacgccggcagcggccgccgggtcggcagc
cgcaaacagcaggccgccaccgatgtggaatacatggtgcgcgacctgtcggagttgaag
atcggcgacccggtggtccacagcagccacggcatcggccgctacatgggcctggtcagc
atggacctgggggagggcgagaccgagttcctgcatctggaatacgccaaggagaccaag
ctctacgtcccggtgtcgcaactgcacgtgatttcgcgctactccggtgcctcgccggaa
gatgcaccgctgcacgcactgggctccggccagtgggaaaaggccaagcgcaaggccgcc
cagcaggtgcgcgatacggccgccgaactgctgaacctgtacgcccgccgcgcgctgcgc
cagggccatgccttccagtattcggcacatgactatgaagccttcgccgacagtttcggt
tttgaggaaaccgccgaccaggccgccgccatcaatgccgtcatcaaggacatgaccggc
ggcaagcccatggaccgcctcatctgcggcgacgtcggcttcggcaagaccgaagtggcc
ctgcgcgccgccttcgtggcggtgatgggcggcaagcaggtcgccattctcgcgccgacc
acgctgctggccgaacagcatgccgccaccttcgccgaccgcttcgccaactggccggtc
aagattgccgaactgtcgcgcttccgcaccggcaaggaagtcacgcaagccatcaagggc
ctgggcgatggcaccatcgatatcgtcatcggtactcacaagctgctctccgatgaagtg
aagttctcgcgcctgggtctggtcatcatcgatgaagaacaccgttttggcgtacgccag
aaggaagccctgaaatcgctgcgcgccgaggtcgatgtgctcacgctgaccgccacgccg
atcccgcgtacgctgggcatggcgctggaaggcctgcgcgatttctcggtgatcgccacc
gcgccgcagaagcgcctggccatcaagaccttcgtgcgcgccgaacaagaatcgaccatc
cgcgaagcctgcctgcgcgaattgaaacgcggcggccaggtctacttcctgcacaacgaa
gtggaaaccatcgccaaccgcaaggccgcgctggagcaacttttgccggaagcgcgcatc
ggcgtggcgcacggtcagatgcacgaacgcgacctggagaaggtgatgcgcgacttcgtg
gcgcagcgcttcaacatcctgctctgtaccaccatcatcgagaccggcattgacgtgccg
actgccaacaccatcatcatgcatcgcgccgacaagttcggcctggcgcagctgcaccaa
ttgcgcggccgcgtcggccgttcgcaccaccaggcttatgcctacctgctggtgcaggat
gtgcagggcttgtccaagcaggcgcagcgccggctggaggcgatccagcagatggaggaa
ctgggcagcggcttctatctcgccatgcacgatttggaaattcgcggtgccggcgaagtg
ctgggcgatcaccagtcgggcgagatccacgagatcggtttccagatgtattcggacatg
ttgaacgaagccgtgcgtgccctgaaggatggacgcgaaccggacctggccgcgccgctg
tcgaccaccaccgagatcaacctgcatgcgcctgcgctgctgcccaatgacttctgcggc
gacgtgcatgagcgtctgtcgctctacaagcgcttcgccaactgcgagaaggccgatgcg
atcgacgccttgcaggaagaactgatcgaccgcttcggcaagctgcccgatgcggccaag
gccctgatcgaaacgcaccgcctgcgcattgcggccaagccgctgggcatcatcaagatc
gatgcccattccgaagcggcgctgctgcagttcgttcccaatccgccgatcgacgccatg
cgcatcatcgagctggtgcagaagaatcgccaggtcaagctcaatggccccgacaagctg
cgcatcacggccaacatgccggacctgaatgcccgcgtgcagcaggtcaaggcgaccatg
aaggcactcaccggttga
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integrated database retrieval system
