Halomicronema hongdechloris: XM38_000230
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Entry
XM38_000230 CDS
T04928
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hhg
Halomicronema hongdechloris
Pathway
hhg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XM38_000230 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhg03400
]
XM38_000230 (mfd)
Enzymes [BR:
hhg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XM38_000230 (mfd)
DNA repair and recombination proteins [BR:
hhg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XM38_000230 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ASC69097
UniProt:
A0A1Z3HFP4
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All DBs
Position
31930..35409
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AA seq
1159 aa
AA seq
DB search
MAFSSITRALGRSPLTADLLDKLQRQSWLRLTGAARLPRGLVVSALAQSRSSPLLVMTAT
LEEAGRWSAQLEAMGWTTVHFYPTSEASPYEPFDQESEMTWGQLQVLADLLRRPTTVTDP
IALVATERALQPHLPPVEVLRTYCLTLAAGQELNLKQLSQHLARLGYDKVSTVEMEGQWA
RRGDIVDVFPVASELPVRLELFGDDLERLREFDPASQRSLDAVSQVVLTPTDYAPIILDG
LEQQGKVTAVLSSAEQDALAQGQRPEGLRRWLGLAFPRVASLLDYVPENTVIALDEPDQC
RAHGEQWLEHVEEHWQDLDQAARPLSPPRLHRCFDNVLADLEIFPHLYLSEIAEEGHGFN
LASRPVPAIPHQFGKLAETIRQQRDRTFAIWLLSAQPSRSVSLLQEHDCPAQFIPNPRDY
GAIDKLQGQHTPVAVKYSGLAEVEGFILPTFRMVVVTDREFFGQHTLATPGYVRKRRRAA
SKQVDPNKMKPGDYVVHRSHGIGRFLRLESLTVSQETREYLVIQYADGLLRVAADQVGAL
SRYRATSEGAPTLNKMSGKAWEKTKGKARKAIKKVAVDLLKLYAQRAKLEGVAYPADMPW
QEELEDSFPYQPTPDQLKAVQDVKRDMESPRPMDRLVCGDVGFGKTEVALRAIFKAVTAH
RQVALLAPTTILTQQHYHTLKERFAPYPIQVRLLNRFRTAEEKKAILARLATGELDVVVG
THQLLGKGVKFKDLGLLVVDEEQRFGVNQKEKIKTLKAQVDVLTLSATPIPRTLYMALSG
VREMSLITTPPPSRRPIKTHLAPYDPEAVRAAIRQELDRGGQVFYVVPRVEGIEEILERL
RQWVPGARLTLAHGQMPEGELESTMLSFSNGEADILVCTTIIESGLDIPRVNTILVEDAH
RFGLSQLYQLRGRVGRAGIQAHAWLFYPRQQALTEKARRRLRAIQEFTQLGSGYQLALRD
MEIRGVGNLLGAEQSGQMDAIGFDLYTDMLEEAFAEIRGQEIPQVEDTQVDLPVTAFIPS
NYIPELEQKMSAYRSLAAASSQVELTQLVADLSDRYGPIPHATEQLIRVLALKQIAKSLG
FARIKPEGKQHVVMETPMEEPAWKRLQEGLPSHLRPRFVYAPGKVIVRGLGVLKPDKQLE
NLTTWLTGMQGALPTSTPG
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggctttctcttccattactcgcgccttggggcgttccccgttaactgctgatctcctc
gataagctgcaacggcagtcctggctcagattgactggagcagctcgactgccgcgggga
ttagtggtatcggctctagcccagagccgctccagccctttactagtgatgacggccacc
ctggaagaggcggggcgctggtctgcccagttagaagccatgggatggacgacagtgcat
ttctatcccacctctgaggcctctccctatgagcccttcgatcaagagtcggagatgact
tgggggcagttgcaggtgttagccgatttactgcgacggccgacgacagtaacagatccc
attgccctggtggctacggagcgagcgctacagccccatctcccgccggtggaggtcctg
cgcacctactgcttgaccttggcagcagggcaggagctgaatctaaagcagttgagtcaa
cacctagctcgattgggctatgacaaggtgtctacggtagagatggaaggacaatgggct
cgccggggagacattgttgatgtatttccggtggcttcggagttaccggtgcgcctggaa
ctgtttggcgatgacctggaaagactgcgagagtttgatccagccagccaacgatctctg
gatgcagtgtctcaggtggtactgacaccgacagactatgctcccattatcctggatggg
ttagagcagcaggggaaggtaactgctgtgctctcatcggccgagcaagatgccctggcc
caaggacaacgacctgagggattgcgacgatggctggggttggcctttcctagggtggcg
tcgctgctggattatgtgcctgagaatacggtcattgccctggatgagccagatcagtgt
cgcgctcacggagagcagtggctggaacatgtggaggaacactggcaagatctagaccag
gcggctagacccctgtctccgccaagactccaccgttgcttcgataatgtcttggcggat
ctagagattttcccgcatctctacctgtcagagatcgctgaagagggccatggctttaac
ctggcgagtcgaccggtaccggccattccccatcaatttggcaagttggcggagacgatt
cggcaacaacgcgatcgcacctttgccatctggctcctatcggctcaaccctcgcgctct
gtttccctactgcaggagcacgattgtccggctcagtttattcccaatccccgcgactat
ggggccatcgacaaactccagggccaacatacccctgtcgccgtgaagtattctggcttg
gccgaggtagaaggcttcatcctgcctacctttcggatggtggtagtcaccgaccgagaa
ttctttggtcaacacaccctggccaccccaggctatgtgcgcaagcgacggcgggccgcc
tcgaagcaggtggatcccaacaagatgaagccgggggactatgtggtccaccgcagccat
ggcatcggtcgctttctacggctagagagtttgactgtcagccaggaaacccgcgaatac
ctggtgattcaatacgccgacggcttgctacgagtggccgctgatcaagtcggcgccctc
tctcgctaccgggccacgagtgaaggcgcccccaccctgaacaagatgtcgggcaaagcc
tgggagaagaccaagggtaaggcccgcaaggcaattaagaaggtggcggtcgacctactg
aagctctatgcccaacgagccaaactggaaggggtggcttatccggcagatatgccttgg
caggaggaattggaagattcctttccctaccagccgactccggatcagctcaaggcggtg
caggatgtgaagcgggacatggagagccctcgtcccatggatcgactggtatgtggggat
gtgggcttcggcaagaccgaggtggccctgcgagccatcttcaaggcggtgacggcccat
cggcaagtggctctgctggcgcccacgacgattctgacccaacagcattaccacaccctg
aaggaacggtttgccccctatccgatccaggtgagactgctgaaccgctttcgcaccgcc
gaagaaaagaaagccatcttagcgcgtctagccacgggggaactcgatgtggtggtgggt
acccaccagttgttggggaaaggagtcaagttcaaggacttgggcttgttggtggtagat
gaggaacagcgtttcggcgtcaaccaaaaggaaaagatcaagacccttaaagctcaggtg
gatgtgcttactcttagcgccaccccgatcccccgcaccctctatatggctctgtctggg
gtgcgggagatgagcctgattactaccccaccgccgtctcggcgtccgattaagacccat
cttgctccctatgacccggaggcggtgcgggccgccattcgccaggagctagaccggggc
ggacaagtcttctatgttgtcccccgggtagagggcatcgaggagattctggagcggttg
cggcagtgggtgccaggggcgcggctgaccctagcccatgggcagatgccggagggggaa
ttggaatccaccatgctcagctttagcaatggggaggccgatatcctggtgtgtaccact
atcatcgagtcggggctggatattcctcgggtgaatacgatcctagtggaagatgcccac
cgcttcggcctgtcccagctgtaccagctgcgggggcgagtagggcgagccgggattcag
gcccatgcttggttgttctatccccggcaacaggccctgacggagaaggcacgacggcgg
ctacgggcaattcaggaatttacccagttgggatcgggctatcaattggccctgcgagac
atggaaattcggggggtcggcaatttattgggggcagagcagtcgggtcagatggatgcc
attggctttgatctgtataccgatatgctggaggaggcctttgctgagattcggggtcag
gaaattcctcaggtggaggatactcaggtggatctgccggtgacggcctttatccccagt
aactatattccggagctggagcagaagatgagtgcctatcgctccttggcggcagctagc
agtcaggtggagttgacccaactggtggcagacttgagtgatcgctatgggccaattccc
cacgccacagaacagttaattcgggtgctagcgttgaagcagattgctaagagtttgggc
tttgcccggattaagccggaaggcaaacaacatgtggtgatggaaacgccgatggaggaa
ccggcttggaagcgactgcaggaaggcttgcctagccatctaaggccccgctttgtctat
gccccgggcaaggtgatcgtgcggggactaggggtgctgaaaccggataagcagctggag
aatctcactacctggctgacggggatgcagggagcattaccgacctcaaccccaggctag
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