Halomonas hydrothermalis: CLM76_13980
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Entry
CLM76_13980 CDS
T05117
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hhh
Halomonas hydrothermalis
Pathway
hhh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hhh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLM76_13980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hhh03400
]
CLM76_13980
Enzymes [BR:
hhh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLM76_13980
DNA repair and recombination proteins [BR:
hhh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLM76_13980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
AAA_22
Glyco_tran_WecG
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ATH79576
LinkDB
All DBs
Position
complement(2992669..2996163)
Genome browser
AA seq
1164 aa
AA seq
DB search
MYDSGSVPAQNEADSMTSFSLLEPPQPQGIRDTLYLKAPPGSATALALAQVAASAPLLVI
TPNTASAQRLEQDLAFYSNVPVLPFPDWETLPYDSFSPHQDIISARLRTLRQLQDGARGI
VLVPINTLMQRLPPVSYIAGRVMTLQSGARLDRETFRESLSRAGYRAVETVYEPGEYAMR
GAIIDLFAMGMDEPIRIDLFDDEIDTLRHFDPGSQRSTDKIDGIELLPAHEYSLSRSAIA
CFREQFETLFDVDPRQCPLYNDALKAIPSPGLEQYLPLFFDETASLFDHVTDDTRIALLP
GVFAAAEQHWQAIEARYVNLGVDPTRPLLPPHRAFFPVSDVFAAIKARPRVEFTEDEQQR
HALAPQARALPSLAINARAKQPLAELANFMAAQPATRLLFVAESRGRREALEEVLAPLKL
SLPHVESFHTFLQGNQPLAITESLVASGLWLETPDLAVISETELFGDVVRQSRRREKATD
DNELAVRHLSELREGAPVVHQAHGVGRYLGLETLEAGGQANEFLALSYADGAKLYVPVDS
LHLISRYSGADDELAPLHKLGSDQWEKARRKAAEKIRDTAAELLDIYARREAQQGVVYEA
PGEEYVRFAASFPFEETPDQQAAIEAVISDMVSPQPMDRVVCGDVGFGKTEVAMRAAFLA
VQSGRQVVVLVPTTLLARQHFENFRDRFADTAVNISLISRFTGGKEMTQTLESIKSGQTD
IVIGTHKLLSKSVELPKMGLLIIDEEHRFGVAQKEKLKTLRAEIDILTLTATPIPRTLNM
AMSGIRDLSIIATPPARRLSVKTFVQQRDDSVIKEALLREILRGGQVYFLHNEVKTIENA
AEQIRELVPEARVAVAHGQLPERSLERVMSDFYHRRFNVLVCSTIIETGIDVPSANTILI
ERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPSPKAMTRDAVKRLEAISASDDLGAGFTL
ASHDMEIRGAGELLGDEQSGQMETIGYSLYMEMLDRAVKAIRAGKTPNIDAPFNTGVEIS
LNLPALIPDDYLHDVQQRLVMYKRIANTQSDGELKELQVELIDRFGLLPQPLKNLIRQTR
LRQRAEQLGIVRIEAGESRGRVLFDGSTQVDPLTLVTLIQTSPQHYRLDGSDTLRFEFAM
ETAEQRFEKVETLLNTLNQKVAKA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
gtgtatgattctggttccgttccagcgcaaaacgaagccgactccatgacctctttttct
ctgctcgaaccgcctcagccgcaagggatacgcgatacgctctacctgaaagcgccgccg
ggcagcgccactgcgctggcattggcccaggtggcggccagcgcaccactgctggtcatt
acgcccaataccgccagcgcccagcgcctggagcaggatctggccttttacagcaacgtg
ccggtgctgccgttccccgattgggaaacattgccttacgacagtttttcaccgcaccag
gatattatctccgcccgactgcgcacgctgaggcagctgcaggacggcgcgcgcggcatc
gtgctggtgcccatcaatacgctgatgcagcgcttgccaccggtgtcttacattgcaggc
cgcgtcatgaccctgcagtccggcgccaggctcgaccgtgaaaccttccgcgaatcgctt
tcacgggcgggctatcgcgcggtggaaacggtctacgagccgggcgaatacgccatgcgc
ggagccatcatcgacctgttcgccatgggcatggacgagccgattcgtatcgacctgttc
gatgacgagatcgacaccctgcgccacttcgacccaggcagccagcgctctaccgacaaa
atcgacggcatcgaactgctgcccgcccacgagtactcgctgagccgcagcgccattgcc
tgcttccgcgagcagttcgagaccctgttcgacgtcgacccgcgccagtgcccgctctac
aacgacgccctgaaggccattccttcaccgggactggagcagtacctgccgctgttcttc
gacgaaaccgcgtcgctgttcgaccacgtgacagatgacacccggatcgccctgctgccg
ggcgtcttcgctgccgccgaacagcactggcaggctatcgaagcgcgctacgtcaatctg
ggcgtcgacccgacacgccccctgctgccgccccatcgtgcgttctttccggtcagcgac
gtgtttgcggccatcaaggcacggccccgagtggagttcaccgaggacgagcagcagcgc
catgcgctggcaccccaagcccgcgccctgccctcgctggccatcaatgcgcgggccaag
cagccgctggccgagctggcaaacttcatggcggcgcagcccgcgacacgcctgctgttc
gtggcggaatctcgtggccgccgagaagcactcgaagaagtcctggcaccgctcaaactc
tcgctaccccacgtagagagcttccacaccttcctgcaaggcaatcagcccctggcgatc
accgaaagtctggtggccagcggcctgtggctggaaacgcccgacctggcggtgatcagc
gaaaccgagctgttcggcgacgtggtacgacagagccgccgccgcgagaaagccaccgat
gacaacgaactggcagttcgccacttgtcggaactccgcgagggggcgccggtggtccac
caggcccacggggtgggccgctatctaggcctggaaaccctggaagccgggggccaggcc
aacgaattcctggcgctctcctatgccgacggggccaagctgtacgttccggtggacagc
ctgcacctgatttctcgctacagcggtgccgacgacgagctggcaccgctgcacaagctg
ggctccgaccagtgggagaaggcccgccgcaaggccgccgaaaagattcgcgacaccgcc
gccgaactgctcgacatctacgcccggcgcgaggcccagcaaggggtggtctacgaagcc
cccggcgaagagtacgtgcgcttcgcggccagcttccccttcgaggagactcccgaccaa
caggccgccatcgaagccgtgatcagcgacatggtatcgccccagcccatggaccgcgta
gtctgcggagacgtgggcttcggcaagaccgaagtcgccatgcgcgcagcgttcctggcc
gtgcagtcgggcaggcaggtggtggtcctggtgcccactaccctgctggcacgccagcat
ttcgaaaacttccgtgaccgctttgccgacacggcggtgaacatcagcctgatctcgcgc
tttaccggcggcaaagagatgacccagaccctggagagcatcaagagcgggcagaccgat
atcgtcatcggcacccacaagctgttgtccaagagcgtcgagctgcccaaaatggggcta
ctgatcatcgatgaagagcaccgttttggcgtcgcccagaaggagaagctcaagactctg
cgggccgagatcgacattctcacgctgaccgccacgcccatcccgagaacgctgaacatg
gcgatgagcggcattcgcgacctctccatcatcgcgacgccacccgcccgccgcctgtcg
gtcaaaaccttcgtccagcagcgcgacgacagcgtgatcaaggaggccctgctgcgggaa
attctgcgcggcggccaggtctacttcctgcacaacgaagtcaagaccatcgaaaacgcc
gccgaacagattcgcgagctggtgccggaagcgcgagtggcggtggcccacggccagctg
ccggagcgtagcctggaacgcgtgatgtcagacttttatcatcggcgcttcaacgtgctg
gtgtgctcgaccatcatcgaaaccggcatcgacgtgccgagcgccaacaccattctgatc
gagcgggccgacaagttcggcctggcccagctgcaccagctgcgggggcgcgtgggccgc
agccaccaccaggcctacgcttatctgctcacgccttcgccgaaggcaatgacccgggat
gccgtcaaacgcctggaagccatcagcgcctccgacgacctgggcgctggcttcaccctg
gccagccacgacatggaaattcgcggtgccggggaattgctgggcgacgagcagagcggc
cagatggaaaccatcggctactcgctttacatggagatgctcgaccgcgccgtgaaggcc
attcgggcaggcaagacgcccaacatcgacgcccccttcaacaccggcgtggaaatcagc
ctgaacctgcccgcgctgattcccgacgactatctgcacgacgtgcagcagcgcctggtg
atgtacaagcgcattgccaacacccagtcggatggcgagctcaaagagctgcaggtagag
ctgatcgatcgtttcggcctgctgcctcagccgctgaagaacctgatccgccagacgcgg
ctgcgccagcgcgccgagcagctcggtattgtccgcatcgaggccggtgaatccaggggc
cgagtgctgttcgacggctctacccaggtcgacccattgaccctggtgacgctgatccag
acctccccgcagcactaccgactggacggttccgacacgttaagatttgaatttgcgatg
gaaaccgccgagcaacgctttgagaaggttgaaacactgttaaacacccttaatcaaaaa
gtagcgaaggcgtga
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