Haloarcula hispanica ATCC 33960: HAH_1173
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Entry
HAH_1173 CDS
T01597
Symbol
lig2
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
hhi
Haloarcula hispanica ATCC 33960
Pathway
hhi03030
DNA replication
hhi03410
Base excision repair
hhi03420
Nucleotide excision repair
hhi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hhi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HAH_1173 (lig2)
03410 Base excision repair
HAH_1173 (lig2)
03420 Nucleotide excision repair
HAH_1173 (lig2)
03430 Mismatch repair
HAH_1173 (lig2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hhi03032
]
HAH_1173 (lig2)
03400 DNA repair and recombination proteins [BR:
hhi03400
]
HAH_1173 (lig2)
Enzymes [BR:
hhi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HAH_1173 (lig2)
6.5.1.6 DNA ligase (ATP or NAD+)
HAH_1173 (lig2)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
HAH_1173 (lig2)
DNA replication proteins [BR:
hhi03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
HAH_1173 (lig2)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
HAH_1173 (lig2)
DNA repair and recombination proteins [BR:
hhi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
HAH_1173 (lig2)
NER (nucleotide excision repair)
Other NER factors
HAH_1173 (lig2)
MMR (mismatch excision repair)
Other MMR factors
HAH_1173 (lig2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEM56788
UniProt:
G0HXQ6
LinkDB
All DBs
Position
I:1105828..1107492
Genome browser
AA seq
554 aa
AA seq
DB search
MEFAAFADRAEKIEAESADTAITEAVTALLTDAGPDLSTLARFVQGRVFPSYESRTLDIG
PRLCYEAIARAAGQNVSTDDVEQRLADLGEIGAVAASYDLGGQQGLAAFGAGGGGDDALT
VAELDDELRNLAAVDGSGSQGTKVDILFGLFSRCSSTEAGYLARLVLSEMRIGVGEGTVR
DAVAAAFDVPVEAVERAVQVSNDYGMVAEVARDEGESGLATVTLEIGRPVQAMLAQAGTV
AGALEDWDRAAVEWKYDGARVQVHFDGEDARLFSRNMEEVTDPLPEVVDTVESTLDAPAI
LDGEVVAVDADGDPLPFQEVLRRFRRKHDVAAAREDVAVRLHAFDCLHADGEDLLDASLK
TRHDRLESLLPAGSDVVSRMWLSDDAEEIENLEAEALAAGQEGIMLKDPTAAYSPGKRGK
HWRKRKPDVETLDCVVTGAEWGEGRRANVLGSFELSVRTDDGYATVGNVATGITDEELDD
LTERFEPHIRREDGRDVALDPAIVFEVGYEEIQASQSYASGYALRFPRFLSVREDKTPAG
ADSLERVERLAASQ
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggagtttgccgccttcgccgaccgggccgagaaaatcgaagctgagagtgccgatacc
gcgattacggaggcggttactgccctacttaccgacgctgggccggacctctcgacgctc
gctcgcttcgtccagggccgtgtgtttccgtcctacgagtcccgcacgctcgacatcggg
ccgcggctctgctacgaggcgattgcccgggcggcgggccagaacgtcagtactgacgac
gtggagcagcgcctcgcggacctgggcgaaatcggggccgtcgcggccagctacgacctc
ggtggtcagcagggcctcgccgcgttcggtgctggtggtggaggggacgacgcgctgacc
gtcgcggaactcgacgacgagctacggaacctggcggctgtcgacggcagtgggagccaa
gggacgaaagtcgatatcctctttggcctgttctcgcggtgttcgtcgacggaagccggc
tacctcgcccgcctcgtcctctcagagatgcgtatcggcgtcggcgaggggacggtccgg
gacgctgtggcggccgctttcgacgtgccagtcgaggccgtcgaacgggccgtgcaggtg
tcgaacgactacggtatggttgccgaagtggcccgcgacgagggggagtccggactggcg
accgtcaccctcgaaatcggccgccccgttcaggcgatgctggcacaggcgggcacggtc
gctggcgcgctcgaagactgggaccgcgccgcggtcgagtggaagtacgatggggctcgc
gtgcaggtccacttcgacggcgaggacgcgcggctgttctcccggaacatggaggaagtc
acggacccgcttcccgaggtcgtcgacactgtcgagtcgacactcgacgcaccggcaatt
ctcgacggcgaggtggtcgcagtcgacgccgacggcgacccgctcccgtttcaggaggtg
ctgcggcgcttccgccggaaacacgacgttgccgcggcccgcgaggacgtggccgtccgc
ctgcacgccttcgactgcctgcacgccgacggcgaggacctgctcgatgcctcgctgaag
acgcgccatgaccgcctcgaatcactcttgcctgccgggagtgacgttgtctcgcggatg
tggctgtccgacgacgccgaggaaattgaaaatctggaggctgaggccctcgccgctggg
caggagggaatcatgctgaaagacccgactgcagcctactcgcccggaaagcggggcaag
cactggcgcaagcgcaagcccgacgtggagacgctggactgcgtcgtcaccggcgcggag
tggggcgagggccgccgggcgaacgtcctgggctcgttcgaactgtctgttcggaccgac
gacggttacgccaccgtcggcaacgtcgcgacgggcattaccgacgaggaactggacgac
ctgacggagcgcttcgaaccgcacatccggcgagaggacggccgcgacgtggcgctcgac
ccagctatcgtcttcgaggtcggctacgaggagatccaggcctcacagtcctacgcctcg
ggctacgcgcttcggttcccccggttcctctcggtccgcgaggacaagacgcccgccggc
gctgactcgctggagcgcgtcgagcggctggcggcgtcacagtaa
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